Evidence map›Paper›PMID 21229308›Full record

ArticleFish physiology and biochemistry2011

Global proteomics analysis of testis and ovary in adult zebrafish (Danio rerio).

Ksenia J Groh, Victor J Nesatyy, Helmut Segner, Rik I L Eggen, Marc J-F Suter

Open access · hybridAbstract read
In one paragraph

Article in Fish physiology and biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 73 citations in OpenAlex.

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  10. Proteomics Analysis of Early Developmental Stages of Zebrafish Embryos.International journal of molecular sciences · 2019
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  12. Review
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  14. Glutathione S-Transferase Protein Expression in Different Life Stages of Zebrafish (Danio rerio).Toxicological sciences : an official journal of the Society of Toxicology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ksenia J GrohEawag: Swiss Federal Institute of Aquatic Science and Technology, Environmental Toxicology, Überlandstrasse 133, Postbox 611, 8600 Dübendorf, Switzerland.
Victor J Nesatyy
Helmut Segner
Rik I L Eggen
Marc J-F Suter
Swiss Federal Institute of Aquatic Science and Technology · CHÉcole Polytechnique Fédérale de Lausanne · CHUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular mechanisms controlling sex determination and differentiation in zebrafish (Danio rerio) are largely unknown. A genome-wide analysis may provide comprehensive insights into the processes involved. The mRNA expression in zebrafish gonads has been fairly well studied, but much less data on the corresponding protein expression are available, although the proteins are considered to be more relevant markers of gene function. Because mRNA and protein abundances rarely correlate well, mRNA profiles need to be complemented with the information on protein expression. The work presented here analyzed the proteomes of adult zebrafish gonads by a multidimensional protein identification technology, generating the to-date most populated lists of proteins expressed in mature zebrafish gonads. The acquired proteomics data partially confirmed existing transcriptomics information for several genes, including several novel transcripts. However, disagreements between mRNA and protein abundances were often observed, further stressing the necessity to assess the expression on different levels before drawing conclusions on a certain gene's expression and function. Several gene groups expressed in a sexually dimorphic way in zebrafish gonads were identified. Their potential importance for gonad development and function is discussed. The data gained in the current study provide a basis for further work on elucidating processes occurring during zebrafish development with use of high-throughput proteomics.

Indexed as

ProteomicsAnimalsApoptosisCell Cycle ProteinsCyclin-Dependent KinasesCytokinesDNADyneinsEgg ProteinsFemaleGene Expression RegulationIntercellular Signaling Peptides and ProteinsMaleMembrane GlycoproteinsOvaryPhosphorylationCell Cycle ProteinsCyclin-Dependent KinasesCytokinesDNADyneinsEgg ProteinsIntercellular Signaling Peptides and ProteinsMembrane GlycoproteinsReceptors, Cell SurfaceRNASeptinsSOX Transcription FactorsVitellogeninsZona Pellucida Glycoproteins

Identifiers

PMID21229308
PMCPMC3146978
OpenAlexW2014110547

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.