Evidence map›Paper›PMID 21228759›Full record

ArticleMolecules (Basel, Switzerland)2011

White spot syndrome virus Orf514 encodes a bona fide DNA polymerase.

Enrique de-la-Re-Vega, Karina D Garcia-Orozco, Aldo A Arvizu-Flores, Gloria Yepiz-Plascencia, Adriana Muhlia-Almazan, Jesús Hernández, Luis G Brieba, Rogerio R Sotelo-Mundo

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. A novel viral thymidylate kinase with dual kinase activity.Journal of bioenergetics and biomembranes · 2015
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Enrique de-la-Re-VegaCentro de Investigación en Alimentación y Desarrollo, A.C., Carretera a Ejido La Victoria Km 0.6, Apartado Postal 1735, Hermosillo, Sonora 83000, Mexico.
Karina D Garcia-Orozco
Aldo A Arvizu-Flores
Gloria Yepiz-Plascencia
Adriana Muhlia-Almazan
Jesús Hernández
Luis G Brieba
Rogerio R Sotelo-Mundo
Centro de Investigación en Alimentación y Desarrollo · MXUniversidad de Sonora · MX

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

White spot syndrome virus (WSSV) is the causative agent of white spot syndrome, one of the most devastating diseases in shrimp aquaculture. The genome of WSSV includes a gene that encodes a putative family B DNA polymerase (ORF514), which is 16% identical in amino acid sequence to the Herpes virus 1 DNA polymerase. The aim of this work was to demonstrate the activity of the WSSV ORF514-encoded protein as a DNA polymerase and hence a putative antiviral target. A 3.5 kbp fragment encoding the conserved polymerase and exonuclease domains of ORF514 was overexpressed in bacteria. The recombinant protein showed polymerase activity but with very low level of processivity. Molecular modeling of the catalytic protein core encoded in ORF514 revealed a canonical polymerase fold. Amino acid sequence alignments of ORF514 indicate the presence of a putative PIP box, suggesting that the encoded putative DNA polymerase may use a host processivity factor for optimal activity. We postulate that WSSV ORF514 encodes a bona fide DNA polymerase that requires accessory proteins for activity and maybe target for drugs or compounds that inhibit viral DNA replication.

Indexed as

Amino Acid SequenceAnimalsBase SequenceDNA-Directed DNA PolymeraseDNA PrimersHumansModels, MolecularMolecular Sequence DataOpen Reading FramesWhite spot syndrome virus 1DNA-Directed DNA PolymeraseDNA Primers

Identifiers

PMID21228759
PMCPMC6259105
OpenAlexW2134711717

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.