Evidence map›Paper›PMID 21228627›Full record

ArticleCell cycle (Georgetown, Tex.)2011

Gene positioning is regulated by phosphorylation of the nuclear pore complex by Cdk1.

Donna Garvey Brickner, Jason H Brickner

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.1field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Microbial cell (Graz, Austria) · 2015
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Donna Garvey BricknerDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Jason H Brickner
Evanston Hospital · USNorthwestern University · US

Funding

Role of DNA localization in regulating transcriptionR01GM080484 · NIGMS · NORTHWESTERN UNIVERSITY · PI BRICKNER, JASON HAYS · 2007 to 2019
$3.6M
NIGMS NIH HHS GM080484NIGMS NIH HHS R01 GM080484
6 · The paper itself

Abstract

In yeast, many genes are targeted to the nuclear periphery through interaction with the Nuclear Pore Complex upon activation. Targeting requires nucleoporin proteins and DNA elements in the promoters of these genes. We have recently found that targeting is regulated through the cell cycle. Immediately following the initiation of DNA replication, active genes lose peripheral localization for ~30 minutes. This regulation is mediated by cyclic phosphorylation of a nucleoporin by Cdk1. Some genes that are targeted to the nuclear periphery upon activation remain at the nuclear periphery after repression, a phenomenon called transcriptional memory. Curiously, the mechanism that regulates localization of active genes to the nuclear periphery does not regulate the localization of the same genes after repression, suggesting that these genes are targeted by two distinct mechanisms. Finally, the localization of other parts of the genome that localize at the nuclear periphery seem to be regulated by a distinct mechanism, suggesting that the spatial organization of the genome is tightly coupled to the progression of the cell cycle.

Indexed as

Models, GeneticBiomarkersCDC2 Protein KinaseCell CycleNuclear EnvelopeNuclear PoreNuclear Pore Complex ProteinsPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereTranscriptional ActivationBiomarkersCDC2 Protein KinaseNuclear Pore Complex ProteinsNUP1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID21228627
PMCPMC3115013
OpenAlexW2129106842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.