Evidence map›Paper›PMID 21228115›Full record

ArticleMolecular & cellular proteomics : MCP2011

Identification of MST1/STK4 and SULF1 proteins as autoantibody targets for the diagnosis of colorectal cancer by using phage microarrays.

Ingrid Babel, Rodrigo Barderas, Ramón Diaz-Uriarte, Víctor Moreno, Adolfo Suarez, María Jesús Fernandez-Aceñero, Ramón Salazar, Gabriel Capellá, J Ignacio Casal

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  4. Review
  5. Review
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  7. Article
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  12. Analysis of Protein-Protein Interactions by Protein Microarrays.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  13. Protein Microarrays for Ocular Diseases.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  14. Phage Microarrays for Screening of Humoral Immune Responses.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Ingrid BabelFunctional Proteomics Laboratory, Centro de Investigaciones Biológicas (CIB-CSIC), 28040 Madrid, Spain.
Rodrigo Barderas
Ramón Diaz-Uriarte
Víctor Moreno
Adolfo Suarez
María Jesús Fernandez-Aceñero
Ramón Salazar
Gabriel Capellá
J Ignacio Casal
Centro de Investigaciones Biológicas Margarita Salas · ESInstitut d'Investigació Biomédica de Bellvitge · ESHospital Universitario De Cabueñes · ESHospital Universitario Fundación Jiménez Díaz · ESSpanish National Cancer Research Centre · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The characterization of the humoral response in cancer patients is becoming a practical alternative to improve early detection. We prepared phage microarrays containing colorectal cancer cDNA libraries to identify phage-expressed peptides recognized by tumor-specific autoantibodies from patient sera. From a total of 1536 printed phages, 128 gave statistically significant values to discriminate cancer patients from control samples. From this, 43 peptide sequences were unique following DNA sequencing. Six phages containing homologous sequences to STK4/MST1, SULF1, NHSL1, SREBF2, GRN, and GTF2I were selected to build up a predictor panel. A previous study with high-density protein microarrays had identified STK4/MST1 as a candidate biomarker. An independent collection of 153 serum samples (50 colorectal cancer sera and 103 reference samples, including healthy donors and sera from other related pathologies) was used as a validation set to study prediction capability. A combination of four phages and two recombinant proteins, corresponding to MST1 and SULF1, achieved an area under the curve of 0.86 to correctly discriminate cancer from healthy sera. Inclusion of sera from other different neoplasias did not change significantly this value. For early stages (A+B), the corrected area under the curve was 0.786. Moreover, we have demonstrated that MST1 and SULF1 proteins, homologous to phage-peptide sequences, can replace the original phages in the predictor panel, improving their diagnostic accuracy.

Indexed as

AutoantibodiesBacteriophage T7Colorectal NeoplasmsHepatocyte Growth FactorHippo KinasesHumansIntracellular Signaling Peptides and ProteinsModels, BiologicalMutagenesis, InsertionalNeoplasm ProteinsPeptidesProtein Array AnalysisProtein Serine-Threonine KinasesProto-Oncogene ProteinsReproducibility of ResultsROC CurveAutoantibodiesHepatocyte Growth FactorHippo KinasesIntracellular Signaling Peptides and Proteinsmacrophage stimulating proteinNeoplasm ProteinsPeptidesProtein Serine-Threonine KinasesProto-Oncogene ProteinsSTK4 protein, humanSULF1 protein, humanSulfotransferases

Identifiers

PMID21228115
PMCPMC3047148
OpenAlexW2131025129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.