ArticleBMC evolutionary biology2011
Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.
Article in BMC evolutionary biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.
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48 citing papers in PubMed.
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- Marker-Assisted Selection in Breeding for Fruit Trait Improvement: A Review.International journal of molecular sciences · 2023Review
- Genome-Wide Analysis of the Gene Structure, Expression and Protein Interactions of the Peach (Frontiers in plant science · 2022Article
- The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae.Horticulture research · 2021Article
- OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.Nucleic acids research · 2021Article
- Recent Duplications Dominate VQ and WRKY Gene Expansions in SixInternational journal of genomics · 2021Article
- Characterization of Japanese Plum (Frontiers in plant science · 2021Article
- RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous crops.Horticulture research · 2020Review
- A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding.G3 (Bethesda, Md.) · 2020Article
- Multiple-population QTL mapping of maturity and fruit-quality traits reveals LG4 region as a breeding target in sweet cherry (Horticulture research · 2020Article
- Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Frontiers in plant science · 2019Article
- Genetic and genomic resources forHorticulture research · 2019Review
- Article
- Developing gene-tagged molecular markers for evaluation of genetic association of appleHorticulture research · 2018Article
- Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map.Horticulture research · 2018Article
- The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.BMC genomics · 2017Article
- Article
- Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution ofPeerJ · 2017Article
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15 authors.
Funding
Abstract
backgroundComparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. The growing body of genomics resources and sequence data for both Prunus and Fragaria permits detailed comparisons between these genera and the recently released Malus × domestica genome sequence.
resultsWe generated a comparative analysis using 806 molecular markers that are anchored genetically to the Prunus and/or Fragaria reference maps, and physically to the Malus genome sequence. Markers in common for Malus and Prunus, and Malus and Fragaria, respectively were 784 and 148. The correspondence between marker positions was high and conserved syntenic blocks were identified among the three genera in the Rosaceae. We reconstructed a proposed ancestral genome for the Rosaceae.
conclusionsA genome containing nine chromosomes is the most likely candidate for the ancestral Rosaceae progenitor. The number of chromosomal translocations observed between the three genera investigated was low. However, the number of inversions identified among Malus and Prunus was much higher than any reported genome comparisons in plants, suggesting that small inversions have played an important role in the evolution of these two genera or of the Rosaceae.
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