Evidence map›Paper›PMID 21224233›Full record

ArticleThe Journal of physiology2011

Role of an extracellular loop in determining the stoichiometry of Na+-HCO₃⁻ cotransporters.

Li-Ming Chen, Ying Liu, Walter F Boron

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Journal of physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Review
  3. Potential Theranostic Roles of SLC4 Molecules in Human Diseases.International journal of molecular sciences · 2023
    Review
  4. Understanding the Physiological Role of Electroneutral NaPharmaceuticals (Basel, Switzerland) · 2022
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Cation-coupled bicarbonate transporters.Comprehensive Physiology · 2014
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. PSD-95 interacts with NBCn1 and enhances channel-like activity without affecting Na/HCO(3) cotransport.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Li-Ming ChenDepartment of Biological Science, Key Laboratory of Molecular Biophysics of Ministry of Education, Huazhong University of Science and Technology School of Life Science and Technology, 1037 Luoyu Road, Wuhan, Hubei Province 430074, P.R. China.   liming.chen@mail.hust.edu.cn
Ying Liu
Walter F Boron
University School · USHuazhong University of Science and Technology · CN

Funding

Physiology of Electrogenic Na/HCO3 CotransportersR37DK030344 · NIDDK · YALE UNIVERSITY · PI BORON, WALTER F · 2002 to 2011
$3.5M
REGULATION OF INTRACELLULAR PH IN RENAL PROXIMAL TUBULER01DK030344 · NIDDK · YALE UNIVERSITY · PI BORON, WALTER F. · 1986 to 2001
$660k
NIDDK NIH HHS DK30344NIDDK NIH HHS R01 DK030344NIDDK NIH HHS R37 DK030344
6 · The paper itself

Abstract

The Na+–HCO₃⁻ cotransporters (NBCs) of the solute carrier 4 family (SLC4) are critical for regulating pH in cells as well as in fluids such as blood and cerebrospinal fluid. Moreover, mutations and gene disruptions in NBC are linked to a wide range of pathologies. NBCe1 (SLC4A4) is electrogenic because it has an apparent Na+:HCO₃⁻ stoichiometry of 1:2 or 1:3, whereas NBCn1 (SLC4A7) is electroneutral because it has an apparent stoichiometry of 1:1. Because stoichiometry influences the effect of transport on membrane potential and vice versa, a central question is what structural features underlie electrogenicity versus electroneutrality. A previous study on rat NBCe1/n1 chimeras demonstrated that the structural elements determining the electrogenicity of NBCe1-A are located within the transmembrane domain, excluding the large third extracellular loop. In the present study we generated a series of chimeras of human NBCe1-A and human NBCn1-A. We found that replacing merely the predicted fourth extracellular loop (EL4) – containing 32 amino acid residues that include 7 prolines – of human NBCe1-A with EL4 of NBCn1-A creates an electroneutral NBC. The opposite switch converts an electroneutral construct to one with electrogenic properties. The introduction of an N-glycosylation site into EL4 confirms that at least a part of it is exposed to the extracellular fluid. We hypothesize that putative EL4 either contributes to the substrate-binding vestibule or indirectly influences substrate binding by interacting with one or more transmembrane segments, thereby controlling the nature of transport.

Indexed as

Extracellular FluidAmino Acid SequenceAnimalsChimeraFemaleHumansMolecular Sequence DataProtein IsoformsProtein Structure, TertiarySodium-Bicarbonate SymportersStereoisomerismXenopus laevisProtein IsoformsSLC4A4 protein, humanSLC4A7 protein, humanSodium-Bicarbonate Symporters

Identifiers

PMID21224233
PMCPMC3060367
OpenAlexW2124555607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.