Evidence map›Paper›PMID 21223361›Full record

ArticleFEMS microbiology letters2011

Flavin mononucleotide (FMN)-based fluorescent protein (FbFP) as reporter for gene expression in the anaerobe Bacteroides fragilis.

Leandro A Lobo, Charles J Smith, Edson R Rocha

Abstract read
In one paragraph

Article in FEMS microbiology letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 57 citations in OpenAlex.

  1. Rational Design of a Circularly Permuted Flavin-Based Fluorescent Protein.Chembiochem : a European journal of chemical biology · 2024
    Article
  2. Review
  3. Article
  4. Article
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  6. Article
  7. Article
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  9. Characterization of flavin binding in oxygen-independent fluorescent reporters.AIChE journal. American Institute of Chemical Engineers · 2020
    Article
  10. TheInfection and immunity · 2020
    Article
  11. Review
  12. Regulating vitamin B12 biosynthesis via theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Leandro A LoboInstituto de Microbiologia Paulo de Gois, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Charles J Smith
Edson R Rocha
East Carolina University · USUniversidade Federal do Rio de Janeiro · BR

Funding

ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR01AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI SMITH, CHARLES J. · 1999 to 2014
$3.5M
Role of Bacteroides fragilis new hemolysins in experimental infection.R21AI068659 · NIAID · EAST CAROLINA UNIVERSITY · PI ROCHA, EDSON R · 2007 to 2008
$388k
The role of iron/heme acquisition mechanisms in Bacteroides fragilis.R21AI079183 · NIAID · EAST CAROLINA UNIVERSITY · PI ROCHA, EDSON R · 2008 to 2009
$385k
ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR56AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI ROCHA, EDSON R, SMITH, CHARLES J. · 2009 to 2009
$334k
NIAID NIH HHS AI068659NIAID NIH HHS AI079183NIAID NIH HHS AI40588NIAID NIH HHS R01 AI040588NIAID NIH HHS R21 AI068659NIAID NIH HHS R21 AI079183NIAID NIH HHS R56 AI040588
6 · The paper itself

Abstract

In this study, we show the expression of flavin mononucleotide-based fluorescent protein (FbFP) BS2 as a marker for gene expression in the opportunistic human anaerobic pathogen Bacteroides fragilis. Bacteroides fragilis 638R strain carrying osu∷bs2 constructs showed inducible fluorescence following addition of maltose anaerobically compared with nonfluorescent cells under glucose-repressed conditions. Bacteria carrying ahpC∷bs2 or dps∷bs2 constructs were fluorescent following induction by oxygen compared with nonfluorescent cells from the anaerobic control cultures. In addition, when these transcriptional fusion constructs were mobilized into B. fragilis IB263, a constitutive peroxide response strain, fluorescent BS2, was detected in both anaerobic and aerobic cultures, confirming the unique properties of the FbFP BS2 to yield fluorescent signal in B. fragilis in the presence and in the absence of oxygen. Moreover, intracellular expression of BS2 was also detected when cell culture monolayers of J774.1 macrophages were incubated with B. fragilis ahpC∷bs2 or dps∷bs2 strains within an anaerobic chamber. This suggests that ahpC and dps are induced following internalization by macrophages. Thus, we show that BS2 is a suitable tool for the detection of gene expression in obligate anaerobic bacteria in in vivo studies.

Indexed as

Genes, ReporterAerobiosisAnaerobiosisAnimalsBacteroides fragilisCell LineCoenzymesFermentationFlavin MononucleotideFluorescenceGene Expression ProfilingGlucoseLuminescent ProteinsMacrophagesMaltoseMiceCoenzymesFlavin MononucleotideGlucoseLuminescent ProteinsMaltose

Identifiers

PMID21223361
PMCPMC3053596
OpenAlexW1902000402

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.