Evidence map›Paper›PMID 21222280›Full record

ArticleSub-cellular biochemistry2010

Pupylation : A Signal for Proteasomal Degradation in Mycobacterium tuberculosis.

Kristin E Burns, K Heran Darwin

Open access · greenAbstract read
In one paragraph

Article in Sub-cellular biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Toxin-based screening of C-terminal tags inbioRxiv : the preprint server for biology · 2024
    Article
  2. MedComm · 2023
    Review
  3. Review
  4. Article
  5. Structural analysis of the dodecameric proteasome activator PafE in Mycobacterium tuberculosis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  6. Article
  7. The Pup-Proteasome System of Mycobacteria.Microbiology spectrum · 2014
    Review
  8. Prokaryotic ubiquitin-like protein modification.Annual review of microbiology · 2014
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kristin E BurnsDepartment of Microbiology, New York University School of Medicine, 550 First Avenue, MSB 236, New York, New York, 10016, USA.
K Heran Darwin
New York University · US

Funding

Virulence Regulation by the Mycobacterium Tuberculosis ProteasomeR01HL092774 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DARWIN, KATERINA HERAN · 2007 to 2017
$4.0M
Mtb Proteasome-Associated Factors and VirulenceR56AI065437 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DARWIN, KATERINA HERAN · 2007 to 2007
$423k
NHLBI NIH HHS R01 HL092774NIAID NIH HHS R56 AI065437
6 · The paper itself

Abstract

This chapter describes the identification of the first prokaryotic ubiquitin-like protein modifier, Pup, which covalently attaches to proteins to target them for destruction by a bacterial proteasome in a manner akin to ubiquitin in eukaryotes. Despite using a proteasome as the end point for proteolysis, Pup and ubiquitin differ in sequence, structure and method of activation and conjugation to protein substrates. Pup is so far the only known posttranslational protein modifier in prokaryotes and its discovery opens the door to the possibility that others are present not only for proteolysis, but also to regulate protein function or localization. Here, we discuss the putative mechanism of activation and conjugation of Pup (termed "pupylation") to target proteins. In addition, because it is unclear whether or not Pup, like ubiquitin, is recycled or degraded during substrate targeting to the proteasome, we propose methods that may identify Pup deconjugation enzymes ("depupylases"). Finally, we outline future directions for Pup research and anti-tuberculosis drug discovery.

Indexed as

Bacterial ProteinsMycobacterium tuberculosisProteasome Endopeptidase ComplexProteolysisUbiquitinsBacterial ProteinsProteasome Endopeptidase ComplexUbiquitins

Identifiers

PMID21222280
PMCPMC6544877
OpenAlexW102894543

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.