ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 100 citations in OpenAlex.
- Development and cross-amplification of novel SSR markers for population genetic analysis of Kitti's hog-nosed bat (Craseonycteris thonglongyai) in Thailand.Scientific reports · 2025Article
- Development and Application of SSR Markers forPlants (Basel, Switzerland) · 2025Article
- Construction of an ultrahigh-density genetic linkage map for Manihot esculenta Crantz and identification of QTL for root quantity traits.BMC plant biology · 2025Article
- Advances in Genetic Analysis and Breeding of Cassava (Plants (Basel, Switzerland) · 2022Review
- KASPar SNP genetic map of cassava for QTL discovery of productivity traits in moderate drought stress environment in Africa.Scientific reports · 2021Article
- Genome-Wide Analysis of Simple Sequence Repeats in Cabbage (Frontiers in plant science · 2021Article
- Technological Innovations for Improving Cassava Production in Sub-Saharan Africa.Frontiers in genetics · 2020Review
- Identification and expression of genes in response to cassava bacterial blight infection.Journal of applied genetics · 2018Article
- Mining and comparative survey of EST-SSR markers among members of Euphorbiaceae family.Molecular biology reports · 2018Article
- Induction of apomixis by dimethyl sulfoxide (DMSO) and genetic identification of apomictic plants in cassava.Breeding science · 2018Article
- QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived fromFrontiers in plant science · 2017Article
- Proteomics Profiling Reveals Carbohydrate Metabolic Enzymes and 14-3-3 Proteins Play Important Roles for Starch Accumulation during Cassava Root Tuberization.Scientific reports · 2016Article
- Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Review
- Development and characterization of polymorphic genic-SSR markers in Larix kaempferi.Molecules (Basel, Switzerland) · 2015Article
- A genetic map of cassava (Manihot esculenta Crantz) with integrated physical mapping of immunity-related genes.BMC genomics · 2015Article
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- High-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations.G3 (Bethesda, Md.) · 2014Article
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- In silico genome comparison and distribution analysis of simple sequences repeats in cassava.International journal of genomics · 2014Article
- Genome-wide discovery and information resource development of DNA polymorphisms in cassava.PloS one · 2013Article
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Authors and funding
11 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Simple sequence repeat (SSR) markers provide a powerful tool for genetic linkage map construction that can be applied for identification of quantitative trait loci (QTL). In this study, a total of 640 new SSR markers were developed from an enriched genomic DNA library of the cassava variety 'Huay Bong 60' and 1,500 novel expressed sequence tag-simple sequence repeat (EST-SSR) loci were developed from the Genbank database. To construct a genetic linkage map of cassava, a 100 F(1) line mapping population was developed from the cross Huay Bong 60 by 'Hanatee'. Polymorphism screening between the parental lines revealed that 199 SSRs and 168 EST-SSRs were identified as novel polymorphic markers. Combining with previously developed SSRs, we report a linkage map consisted of 510 markers encompassing 1,420.3 cM, distributed on 23 linkage groups with a mean distance between markers of 4.54 cM. Comparison analysis of the SSR order on the cassava linkage map and the cassava genome sequences allowed us to locate 284 scaffolds on the genetic map. Although the number of linkage groups reported here revealed that this F(1) genetic linkage map is not yet a saturated map, it encompassed around 88% of the cassava genome indicating that the map was almost complete. Therefore, sufficient markers now exist to encompass most of the genomes and efficiently map traits in cassava.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.