Evidence map›Paper›PMID 21220341›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors.

Keunhwa Kim, Jieun Shin, Sang-Hee Lee, Hee-Seok Kweon, Julin N Maloof, Giltsu Choi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 87 citations in OpenAlex.

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  14. Gravity Signaling in Flowering Plant Roots.Plants (Basel, Switzerland) · 2020
    Review
  15. Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Keunhwa KimDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea.
Jieun Shin
Sang-Hee Lee
Hee-Seok Kweon
Julin N Maloof
Giltsu Choi
Korea Advanced Institute of Science and Technology · KRKorea Basic Science Institute · KRUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochromes are red and far-red light photoreceptors that regulate various aspects of plant development. One of the less-understood roles of phytochromes is the inhibition of hypocotyl negative gravitropism, which refers to the loss of hypocotyl gravitropism and resulting random growth direction in red or far-red light. This light response allows seedlings to curve toward blue light after emergence from the soil and enhances seedling establishment in the presence of mulch. Phytochromes inhibit hypocotyl negative gravitropism by inhibiting four phytochrome-interacting factors (PIF1, PIF3, PIF4, PIF5), as shown by hypocotyl agravitropism of dark-grown pif1 pif3 pif4 pif5 quadruple mutants. We show that phytochromes inhibit negative gravitropism by converting starch-filled gravity-sensing endodermal amyloplasts to other plastids with chloroplastic or etioplastic features in red or far-red light, whereas PIFs promote negative gravitropism by inhibiting the conversion of endodermal amyloplasts to etioplasts in the dark. By analyzing transgenic plants expressing PIF1 with an endodermis-specific SCARECROW promoter, we further show that endodermal PIF1 is sufficient to inhibit the conversion of endodermal amyloplasts to etioplasts and hypocotyl negative gravitropism of the pif quadruple mutant in the dark. Although the functions of phytochromes in gravitropism and chloroplast development are normally considered distinct, our results indicate that these two functions are closely related.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsChloroplastsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGravitropismHypocotylMicroscopy, Electron, TransmissionMutationPhytochrome APhytochrome BPlants, Genetically ModifiedPlastidsSeedlingsArabidopsis ProteinsAt2g20180 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsPHYA protein, ArabidopsisPHYB protein, ArabidopsisPhytochrome APhytochrome BPIF3 protein, ArabidopsisPIF4 protein, ArabidopsisPIF5 protein, Arabidopsis

Identifiers

PMID21220341
PMCPMC3029704
OpenAlexW2140179153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.