Evidence map›Paper›PMID 21220328›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

A CD133-related gene expression signature identifies an aggressive glioblastoma subtype with excessive mutations.

Xiaowei Yan, Li Ma, Danielle Yi, Jae-geun Yoon, Alan Diercks, Gregory Foltz, Nathan D Price, Leroy E Hood, Qiang Tian

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Review
  3. Advancing glioblastoma therapy with surface-modified nanoparticles.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. The mutated in colorectal cancer (Frontiers in oncology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaowei YanInstitute for Systems Biology, Seattle, WA 98103, USA.
Li Ma
Danielle Yi
Jae-geun Yoon
Alan Diercks
Gregory Foltz
Nathan D Price
Leroy E Hood
Qiang Tian

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Nation Center- Integrative Biomedical Informatics(RMI)U54DA021519 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID · 2005 to 2010
$21.3M
QUANTITATIVE IMAGE ANALYSIS SPECIALIZED RESOURCE COREU54CA119347 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SAWYERS, CHARLES L · 2005 to 2009
$17.8M
STEM CELL DETRMINATION GENES IN HSC AND HEMATOLYMPHOID CELLS IN MICEP01DK053074 · NIDDK · STANFORD UNIVERSITY · PI CLARKE, MICHAEL F · 1997 to 2007
$8.3M
Identifying network pertubation using secreted protein profiles in glioblastomaR00CA126184 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI PRICE, NATHAN D · 2009 to 2011
$747k
Comprehensive Identification of bivalent promoters in Brain Tumor Stem CellsR21CA135339 · NCI · SWEDISH MEDICAL CENTER, FIRST HILL · PI FOLTZ, GREGORY D · 2009 to 2010
$392k
NCI NIH HHS R00 CA126184NCI NIH HHS R21 CA135339NCI NIH HHS R21 CA135339-01A2NCI NIH HHS U54 CA119347NIDA NIH HHS U54 DA021519NIDDK NIH HHS P01 DK053074NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

Cancer cells are heterogeneous and, it has been proposed, fall into at least two classes: the tumor-initiating cancer stem cells (CSC) and the more differentiated tumor cells. The transmembrane protein CD133 has been widely used to isolate putative CSC populations in several cancer types, but its validity as a CSC marker and hence its clinical ramifications remain controversial. Here, we conducted transcriptomic profiling of sorted CD133(+) and CD133(-) cells from human glioblastoma multiforme (GBM) and, by subtractive analysis, established a CD133 gene expression signature composed of 214 differentially expressed genes. Extensive computational comparisons with a compendium of published gene expression profiles reveal that the CD133 gene signature transcriptionally resembles human ES cells and in vitro cultured GBM stem cells, and this signature successfully distinguishes GBM from lower-grade gliomas. More importantly, the CD133 gene signature identifies an aggressive subtype of GBM seen in younger patients with shorter survival who bear excessive genomic mutations as surveyed through the Cancer Genome Atlas Network GBM mutation spectrum. Furthermore, the CD133 gene signature distinguishes higher-grade breast and bladder cancers from their lower-grade counterparts. Our systematic analysis provides molecular and genetic support for the stem cell-like nature of CD133(+) cells and an objective means for evaluating cancer aggressiveness.

Indexed as

Gene Expression ProfilingGene Expression Regulation, NeoplasticAC133 AntigenAntigens, CDCluster AnalysisEmbryonic Stem CellsFlow CytometryGlioblastomaGlycoproteinsHumansImmunohistochemistryNeoplastic Stem CellsNeural Stem CellsOligonucleotide Array Sequence AnalysisPeptidesTumor Cells, CulturedAC133 AntigenAntigens, CDGlycoproteinsPeptidesPROM1 protein, human

Identifiers

PMID21220328
PMCPMC3029739

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.