Evidence map›Paper›PMID 21220303›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Atomic model of a cypovirus built from cryo-EM structure provides insight into the mechanism of mRNA capping.

Lingpeng Cheng, Jingchen Sun, Kai Zhang, Zongjun Mou, Xiaoxing Huang, Gang Ji, Fei Sun, Jingqiang Zhang, Ping Zhu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. In situ structures of polymerase complex of mammalian reovirus illuminate RdRp activation and transcription regulation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Viral Capsid and Polymerase in Reoviridae.Sub-cellular biochemistry · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Real-space refinement in PHENIX for cryo-EM and crystallography.Acta crystallographica. Section D, Structural biology · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Biological cryo-electron microscopy in China.Protein science : a publication of the Protein Society · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Lingpeng ChengNational Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Beijing 100101, China.
Jingchen Sun
Kai Zhang
Zongjun Mou
Xiaoxing Huang
Gang Ji
Fei Sun
Jingqiang Zhang
Ping Zhu
Chinese Academy of Sciences · CNInstitute of Biophysics · CNSouth China Agricultural University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cytoplasmic polyhedrosis virus (CPV) from the family Reoviridae belongs to a subgroup of "turreted" reoviruses, in which the mRNA capping activity occurs in a pentameric turret. We report a full atomic model of CPV built from a 3D density map obtained using cryoelectron microscopy. The image data for the 3D reconstruction were acquired exclusively from a CCD camera. Our structure shows that the enzymatic domains of the pentameric turret of CPV are topologically conserved and that there are five unique channels connecting the guanylyltransferase and methyltransferase regions. This structural organization reveals how the channels guide nascent mRNA sequentially to guanylyltransferase, 7-N-methyltransferase, and 2'-O-methyltransferase in the turret, undergoing the highly coordinated mRNA capping activity. Furthermore, by fitting the deduced amino acid sequence of the protein VP5 to 120 large protrusion proteins on the CPV capsid shell, we confirmed that this protrusion protein is encoded by CPV RNA segment 7.

Indexed as

RNA CapsAmino Acid SequenceCapsidCapsid ProteinsCryoelectron MicroscopyModels, MolecularModels, StructuralMolecular Sequence DataMolecular StructureProtein ConformationProtein Structure, SecondaryProtein Structure, TertiaryReoviridaeRNA, MessengerRNA, ViralSequence Homology, Amino AcidCapsid ProteinsRNA CapsRNA, MessengerRNA, Viral

Identifiers

PMID21220303
PMCPMC3029759
OpenAlexW2067249896

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.