Evidence map›Paper›PMID 21219468›Full record

ArticleMolecular microbiology2011

Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis.

Alexander G Bobrov, Olga Kirillina, Dmitri A Ryjenkov, Christopher M Waters, Paul A Price, Jacqueline D Fetherston, Dietrich Mack, William E Goldman, Mark Gomelsky, Robert D Perry

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 155 citations in OpenAlex.

  1. Emergence, global dispersal, and local adaptations ofApplied and environmental microbiology · 2026
    Review
  2. Discovery of Novel c-di-GMP-Related Genes inPathogens (Basel, Switzerland) · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Nucleotides as Bacterial Second Messengers.Molecules (Basel, Switzerland) · 2023
    Review
  8. Comparison ofEpigenomes · 2023
    Article
  9. Article
  10. Article
  11. CsrA-Mediated Translational Activation of theJournal of bacteriology · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. A frameshift ineLife · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Dysregulation of Cytosolic c-di-GMP inFrontiers in cellular and infection microbiology · 2022
    Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

Alexander G BobrovDepartment of Microbiology, Immunology and Molecular Genetics, University of Kentucky, Lexington, KY, USA. bobrov@uky.edu
Olga Kirillina
Dmitri A Ryjenkov
Christopher M Waters
Paul A Price
Jacqueline D Fetherston
Dietrich Mack
William E Goldman
Mark Gomelsky
Robert D Perry
University of Kentucky · USChemical Diversity Research Institute · RUMichigan State University · USSwansea University · GBUniversity of North Carolina at Chapel Hill · USUniversity of Wyoming · USWashington University in St. Louis · US

Funding

Yessinia autotransporters (Yaps): Structure, function, and host responseU54AI057157 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEMPOWSKI, GREGORY D · 2003 to 2013
$91.4M
The Impact of Microbiome Composition, Diversity, and Function on Enteric DiseaseU19AI090872 · NIAID · MICHIGAN STATE UNIVERSITY · PI MANSFIELD, LINDA S. · 2010 to 2014
$7.1M
Plague biofilm formation--regulation and functionR01AI025098 · NIAID · UNIVERSITY OF KENTUCKY · PI PERRY, ROBERT DONALD · 1993 to 2013
$2.9M
Characterization of the Cyclic Di-GMP Signaling System of Vibrio choleraeK22AI080937 · NIAID · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2009 to 2010
$275k
IRON STORAGE AND UPTAKE IN YERSINIA PESTISR29AI025098 · NIAID · UNIVERSITY OF KENTUCKY · PI PERRY, ROBERT DONALD · 1988 to 1992
–
NIAID NIH HHS AI080937NIAID NIH HHS AI25098NIAID NIH HHS K22 AI080937NIAID NIH HHS R01 AI025098NIAID NIH HHS U19 AI090872NIAID NIH HHS U54 AI057157
6 · The paper itself

Abstract

Cyclic di-GMP (c-di-GMP) is a signalling molecule that governs the transition between planktonic and biofilm states. Previously, we showed that the diguanylate cyclase HmsT and the putative c-di-GMP phosphodiesterase HmsP inversely regulate biofilm formation through control of HmsHFRS-dependent poly-β-1,6-N-acetylglucosamine synthesis. Here, we systematically examine the functionality of the genes encoding putative c-di-GMP metabolic enzymes in Yersinia pestis. We determine that, in addition to hmsT and hmsP, only the gene y3730 encodes a functional enzyme capable of synthesizing c-di-GMP. The seven remaining genes are pseudogenes or encode proteins that do not function catalytically or are not expressed. Furthermore, we show that HmsP has c-di-GMP-specific phosphodiesterase activity. We report that a mutant incapable of c-di-GMP synthesis is unaffected in virulence in plague mouse models. Conversely, an hmsP mutant, unable to degrade c-di-GMP, is defective in virulence by a subcutaneous route of infection due to poly-β-1,6-N-acetylglucosamine overproduction. This suggests that c-di-GMP signalling is not only dispensable but deleterious for Y. pestis virulence. Our results show that a key event in the evolution of Y. pestis from the ancestral Yersinia pseudotuberculosis was a significant reduction in the complexity of its c-di-GMP signalling network likely resulting from the different disease cycles of these human pathogens.

Indexed as

Signal Transduction3',5'-Cyclic-GMP PhosphodiesterasesAnimalsBacterial ProteinsBiofilmsCyclic GMPDisease Models, AnimalHumansMicePlagueVirulenceVirulence FactorsYersinia pestis3',5'-Cyclic-GMP PhosphodiesterasesBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPHMST protein, Yersinia pestisVirulence Factors

Identifiers

PMID21219468
PMCPMC3058942
OpenAlexW2149601262

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.