Evidence map›Paper›PMID 21219459›Full record

ArticleMolecular microbiology2011

Characterization of Helicobacter pylori factors that control transformation frequency and integration length during inter-strain DNA recombination.

Olivier Humbert, Marion S Dorer, Nina R Salama

Abstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. DNA binding is rate-limiting for natural transformation.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Base-excision restriction enzymes: expanding the world of epigenetic immune systems.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Basic Characterization of Natural Transformation in a Highly TransformableFrontiers in cellular and infection microbiology · 2018
    Article
  13. Methylation-dependent DNA discrimination in natural transformation ofProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
  15. Article
  16. Natural Competence Is Common among Clinical Isolates ofFrontiers in cellular and infection microbiology · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Olivier HumbertDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Marion S Dorer
Nina R Salama

Funding

GENETIC REQUIREMENTS OF HELICOBACTER PYLORI INFECTIONR01AI054423 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Nina Salama · 2004 to 2026
$9.5M
DNA EXCHANGE DURING STOMACH COLONIZATION BY HELICOBACTER PYLORIK01DK080894 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DORER, MARION SHONN · 2008 to 2011
$369k
NIAID NIH HHS AI054423NIAID NIH HHS R01 AI054423NIDDK NIH HHS DK080894NIDDK NIH HHS K01 DK080894
6 · The paper itself

Abstract

Helicobacter pylori is a genetically diverse bacterial species, owing in part to its natural competence for DNA uptake that facilitates recombination between strains. Inter-strain DNA recombination occurs during human infection and the H. pylori genome is in linkage equilibrium worldwide. Despite this high propensity for DNA exchange, little is known about the factors that limit the extent of recombination during natural transformation. Here, we identify restriction-modification (R-M) systems as a barrier to transformation with homeologous DNA and find that R-M systems and several components of the recombination machinery control integration length. Type II R-M systems, the nuclease nucT and resolvase ruvC reduced integration length whereas the helicase recG increased it. In addition, we characterized a new factor that promotes natural transformation in H. pylori, dprB. Although free recombination has been widely observed in H. pylori, our study suggests that this bacterium uses multiple systems to limit inter-strain recombination.

Indexed as

Recombination, GeneticTransformation, BacterialBacterial ProteinsDeoxyribonucleasesDNA, BacterialDNA HelicasesDNA Restriction-Modification EnzymesHelicobacter pyloriRecombinasesBacterial ProteinsDeoxyribonucleasesDNA, BacterialDNA HelicasesDNA Restriction-Modification EnzymesRecombinases

Identifiers

PMID21219459
PMCPMC3075595

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.