Evidence map›Paper›PMID 21217689›Full record

ArticleNature chemical biology2011

Directed evolution of hydrolases for prevention of G-type nerve agent intoxication.

Rinkoo D Gupta, Moshe Goldsmith, Yacov Ashani, Yair Simo, Gavriel Mullokandov, Hagit Bar, Moshe Ben-David, Haim Leader, Raanan Margalit, Israel Silman and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
25.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 200 citations in OpenAlex.

  1. Article
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  11. Article
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  13. Review
  14. Utilization of diverse organophosphorus pollutants by marine bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Droplet Microfluidics and Directed Evolution of Enzymes: An Intertwined Journey.Angewandte Chemie (International ed. in English) · 2021
    Review
  17. Article
  18. Review
  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Rinkoo D GuptaDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Moshe Goldsmith
Yacov Ashani
Yair Simo
Gavriel Mullokandov
Hagit Bar
Moshe Ben-David
Haim Leader
Raanan Margalit
Israel Silman
Joel L Sussman
Dan S Tawfik
Weizmann Institute of Science · IL

Funding

Training and Education CoreU54NS058183 · NINDS · U.S. ARMY MEDICAL RESEARCH INST CHEM DEF · PI CERASOLI, DOUGLAS MARK, MAGLIERY, THOMAS J · 2006 to 2013
$20.6M
PHS HHS W81XWH-07-2-0020
6 · The paper itself

Abstract

Organophosphate nerve agents are extremely lethal compounds. Rapid in vivo organophosphate clearance requires bioscavenging enzymes with catalytic efficiencies of >10(7) (M(-1) min(-1)). Although serum paraoxonase (PON1) is a leading candidate for such a treatment, it hydrolyzes the toxic S(p) isomers of G-agents with very slow rates. We improved PON1's catalytic efficiency by combining random and targeted mutagenesis with high-throughput screening using fluorogenic analogs in emulsion compartments. We thereby enhanced PON1's activity toward the coumarin analog of S(p)-cyclosarin by ∼10(5)-fold. We also developed a direct screen for protection of acetylcholinesterase from inactivation by nerve agents and used it to isolate variants that degrade the toxic isomer of the coumarin analog and cyclosarin itself with k(cat)/K(M) ∼ 10(7) M(-1) min(-1). We then demonstrated the in vivo prophylactic activity of an evolved variant. These evolved variants and the newly developed screens provide the basis for engineering PON1 for prophylaxis against other G-type agents.

Indexed as

Directed Molecular EvolutionAcetylcholinesteraseAryldialkylphosphataseBiocatalysisChemical Warfare AgentsEmulsionsHydrolasesHydrolysisPoisoningAcetylcholinesteraseAryldialkylphosphataseChemical Warfare AgentsEmulsionsHydrolases

Identifiers

PMID21217689
OpenAlexW2012815969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.