Evidence map›Paper›PMID 21216996›Full record

ArticleJournal of bacteriology2011

The integrity of the periplasmic domain of the VirA sensor kinase is critical for optimal coordination of the virulence signal response in Agrobacterium tumefaciens.

Gauri R Nair, Xiaoqin Lai, Arlene A Wise, Benjamin Wonjae Rhee, Mark Jacobs, Andrew N Binns

Abstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Mechanistic Analysis of the VirA Sensor Kinase inFrontiers in microbiology · 2022
    Article
  3. TheScience signaling · 2021
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Agrobacterium: nature's genetic engineer.Frontiers in plant science · 2014
    Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Gauri R NairDepartment of Biology, University of Pennsylvania, 415 South University Ave., Philadelphia, PA 19104-6018, USA.
Xiaoqin Lai
Arlene A Wise
Benjamin Wonjae Rhee
Mark Jacobs
Andrew N Binns
South University · USUniversity of Pennsylvania · US

Funding

CHEMICAL &GENETIC APPROACHES TO DEFINE CELL ACTIVATIONR01GM047369 · NIGMS · UNIVERSITY OF CHICAGO · PI LYNN, DAVID GILBERT · 1992 to 2005
$1.9M
NIGMS NIH HHS GM47369NIGMS NIH HHS R01 GM047369
6 · The paper itself

Abstract

The plant pathogen Agrobacterium tumefaciens responds to three main signals at the plant-bacterium interface: phenolics, such as acetosyringone (AS), monosaccharides, and acidic pH (∼5.5). These signals are transduced via the chromosomally encoded sugar binding protein ChvE and the Ti plasmid-encoded VirA/VirG two-component regulatory system, resulting in the transcriptional activation of the Ti plasmid virulence genes. Here, we present genetic and physical evidence that the periplasmic domain of VirA dimerizes independently of other parts of the protein, and we examine the effects of several engineered mutations in the periplasmic and transmembrane regions of VirA on vir-inducing capacity as indicated by AS sensitivity and maximal level of vir-inducing activity at saturating AS levels. The data indicate that helix-breaking mutations throughout the periplasmic domain of VirA or mutations that reposition the second transmembrane domain (TM2) of VirA relieve the periplasmic domain's repressive effects on the maximal activity of this kinase in response to phenolics, effects normally relieved only when ChvE, sugars, and low pH are also present. Such relief, however, does not sensitize VirA to low concentrations of phenolics, the other major effect of the ChvE-sugar and low pH signals. We further demonstrate that amino acid residues in a small Trg-like motif in the periplasmic domain of VirA are crucial for transmission of the ChvE-sugar signal to the cytoplasmic domain. These experiments provide evidence that small perturbations in the periplasmic domain of VirA can uncouple sugar-mediated changes in AS sensitivity from the sugar-mediated effects on maximal activity.

Indexed as

Gene Expression Regulation, BacterialSignal TransductionAgrobacterium tumefaciensAmino Acid SequenceHistidine KinaseMolecular Sequence DataMutant ProteinsMutationProtein Interaction Domains and MotifsProtein Interaction MappingProtein KinasesProtein MultimerizationProtein Structure, SecondaryVirulence FactorsHistidine KinaseMutant ProteinsProtein KinasesVirulence Factors

Identifiers

PMID21216996
PMCPMC3067612
OpenAlexW2146128843

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.