ArticlePlant & cell physiology2011
Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.
Article in Plant & cell physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
14 citing papers in PubMed, 24 citations in OpenAlex.
- GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data.Database : the journal of biological databases and curation · 2025Article
- GelFAP v2.0: an improved platform for Gene functional analysis in Gastrodia elata.BMC genomics · 2023Article
- Development of transgenic male-sterile rice by using anther-specific promoters identified by comprehensive screening of the gene expression profile database 'RiceXPro'.Breeding science · 2018Article
- SpinachDB: A Well-Characterized Genomic Database for Gene Family Classification and SNP Information of Spinach.PloS one · 2016Article
- OryzaGenome: Genome Diversity Database of Wild Oryza Species.Plant & cell physiology · 2016Article
- Detection of QTLs for white-back and basal-white grains caused by high temperature during ripening period in japonica rice.Breeding science · 2015Article
- Article
- MEGANTE: a web-based system for integrated plant genome annotation.Plant & cell physiology · 2014Article
- The plant ontology as a tool for comparative plant anatomy and genomic analyses.Plant & cell physiology · 2013Article
- RiceXPro version 3.0: expanding the informatics resource for rice transcriptome.Nucleic acids research · 2013Article
- RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.Database : the journal of biological databases and curation · 2013Article
- A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Molecular genetics, physiology and biology of self-incompatibility in Brassicaceae.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2012Review
- AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.Evolutionary bioinformatics online · 2012Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Rice TOGO Browser is an online public resource designed to facilitate integration and visualization of mapping data of bacterial artificial chromosome (BAC)/P1-derived artificial chromosome (PAC) clones, genes, restriction fragment length polymorphism (RFLP)/simple sequence repeat (SSR) markers and phenotype data represented as quantitative trait loci (QTLs) onto the genome sequence, and to provide a platform for more efficient utilization of genome information from the point of view of applied genomics as well as functional genomics. Three search options, namely keyword search, region search and trait search, generate various types of data in a user-friendly interface with three distinct viewers, a chromosome viewer, an integrated map viewer and a sequence viewer, thereby providing the opportunity to view the position of genes and/or QTLs at the chromosomal level and to retrieve any sequence information in a user-defined genome region. Furthermore, the gene list, marker list and genome sequence in a specified region delineated by RFLP/SSR markers and any sequences designed as primers can be viewed and downloaded to support forward genetics approaches. An additional feature of this database is the graphical viewer for BLAST search to reveal information not only for regions with significant sequence similarity but also for regions adjacent to those with similarity but with no hits between sequences. An easy to use and intuitive user interface can help a wide range of users in retrieving integrated mapping information including agronomically important traits on the rice genome sequence. The database can be accessed at http://agri-trait.dna.affrc.go.jp/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.