Evidence map›Paper›PMID 21216580›Full record

ReviewCurrent opinion in immunology2011

Epigenetic regulation of antigen receptor gene rearrangement.

Ann J Feeney

Abstract readReview
In one paragraph

Review in Current opinion in immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Histone methylation and V(D)J recombination.International journal of hematology · 2014
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Chromatin computation.PloS one · 2012
    Article
  9. Review
  10. The multiple shark Ig H chain genes rearrange and hypermutate autonomously.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Ann J FeeneyDepartment of Immunology and Microbial Science, IMM22, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 920137, USA. feeney@scripps.edu

Funding

JUNCTIONAL DIVERSITY IN B AND T CELLSR01AI029672 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI FEENEY, ANN J · 1991 to 2009
$3.4M
Role of CTCF and Cohesin in V(D)J RearrangementR01AI082918 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI FEENEY, ANN J · 2010 to 2014
$2.4M
NIAID NIH HHS R01 AI029672NIAID NIH HHS R01 AI082918
6 · The paper itself

Abstract

Recent studies of the regulation of antigen receptor rearrangement have revealed several completely new levels of control. Not only do antigen receptor loci undergo changes in histone modifications as they become accessible for recombination, but also the number of different histone modifications and the variation at different parts of each receptor locus reveal great complexity. RAG2 is now known to bind to one of these histone modifications, H3K4me3, and this targets the initial RAG binding events to the J genes. The large megabase receptor loci undergo 3D changes in their structure during rearrangement, and receptor loci move throughout the nucleus, transiently binding to heterochromatin, and transiently pairing with each other. RAG-mediated DNA breaks promote some of these movements, and also result in widespread changes in the transcriptional profile promoting differentiation.

Indexed as

Epigenesis, GeneticGene RearrangementChromatin Assembly and DisassemblyHistonesHumansReceptors, AntigenTranscription, GeneticHistonesReceptors, Antigen

Identifiers

PMID21216580
PMCPMC3073619

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.