Evidence map›Paper›PMID 21216217›Full record

ArticleAnalytical biochemistry2011

A rapid assay for assessment of sphingosine kinase inhibitors and substrates.

Yugesh Kharel, Thomas P Mathews, Andrew J Kennedy, Joseph D Houck, Timothy L Macdonald, Kevin R Lynch

Abstract read
In one paragraph

Article in Analytical biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

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  13. Targeting sphingosine kinase 1 attenuates bleomycin-induced pulmonary fibrosis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2013
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  14. Review
  15. Effect of alkyl chain length on sphingosine kinase 2 selectivity.Bioorganic & medicinal chemistry letters · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yugesh KharelDepartment of Pharmacology, University of Virginia, Charlottesville, VA 22904, USA. yk2n@virginia.edu
Thomas P Mathews
Andrew J Kennedy
Joseph D Houck
Timothy L Macdonald
Kevin R Lynch
University of Virginia · US

Funding

Molecular Pharmacology of Sphingosine 1-PhosphateR01GM067958 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI LYNCH, KEVIN R. · 2004 to 2014
$3.7M
NIGMS NIH HHS R01 GM067958
6 · The paper itself

Abstract

Sphingosine kinases (SphKs) catalyze the transfer of phosphate from adenosine triphosphate (ATP) to sphingosine to generate sphingosine 1-phosphate (S1P), an important bioactive lipid molecule that mediates a diverse range of cell signaling processes. The conventional assay of SphK enzymatic activity uses [γ-(32)P]ATP and sphingosine as substrates, with the radiolabeled S1P product recovered by organic extraction, displayed by thin layer chromatography, and quantified by liquid scintillation counting. Although this assay is sensitive and accurate, it is slow and labor-intensive; thus, it precludes the simultaneous screening of more than a few inhibitor compounds. Here we describe a 96-well assay for SphKs that is rapid and reproducible. Our method, which takes advantage of the limited solubility of S1P, detects radioactive S1P adhering to the plate by scintillation proximity counting. Our procedure obviates extraction into organic solvents, postreaction transfers, and chromatography. Furthermore, our assay enables assessment of both inhibitors and substrates, and it can detect endogenous SphK activity in cell and tissue extracts. The SphK kinetic parameter, K(m), and the K(i) values of inhibitors determined with our assay and the conventional assay were indistinguishable. These results document that our assay is well-suited for the screening of chemical libraries of SphK inhibitors.

Indexed as

High-Throughput Screening AssaysAdenosine TriphosphateChromatography, High Pressure LiquidChromatography, Thin LayerEnzyme InhibitorsKineticsLysophospholipidsPhosphorus RadioisotopesPhosphotransferases (Alcohol Group Acceptor)Scintillation CountingSmall Molecule LibrariesSphingosineSphingosine KinaseSubstrate SpecificityAdenosine TriphosphateEnzyme InhibitorsLysophospholipidsPhosphorus RadioisotopesPhosphotransferases (Alcohol Group Acceptor)Small Molecule LibrariesSphingosinesphingosine 1-phosphateSphingosine Kinase

Identifiers

PMID21216217
PMCPMC3049835
OpenAlexW1965326179

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.