Evidence map›Paper›PMID 21214869›Full record

ArticleMolecular oral microbiology2011

Transcriptome analysis of LuxS-deficient Streptococcus mutans grown in biofilms.

Z T Wen, A H Nguyen, J P Bitoun, J Abranches, H V Baker, R A Burne

Open access · greenAbstract read
In one paragraph

Article in Molecular oral microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Silent signals: howFrontiers in oral health · 2024
    Review
  6. Biofilm Formation inMicroorganisms · 2023
    Article
  7. Article
  8. Identification of a new probiotic strain,Frontiers in microbiology · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Frontiers in microbiology · 2021
    Article
  15. Article
  16. Article
  17. Short-ChainApplied and environmental microbiology · 2020
    Article
  18. The Biology ofMicrobiology spectrum · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Z T WenDepartment of Oral and Craniofacial Biology and Department of Microbiology, Immunology and Parasitology, LSU Health Sciences Center, New Orleans, LA, USA. zwen@lsuhsc.edu
A H Nguyen
J P Bitoun
J Abranches
H V Baker
R A Burne
Louisiana State University Health Sciences Center New Orleans · USUniversity of Florida · USUniversity of Rochester · US

Funding

GENE REGULATION AND PHYSIOLOGY OF STREPTOCOCCUS MUTANSR01DE012236 · NIDCR · UNIVERSITY OF ROCHESTER · PI Lin Zeng · 1997 to 2026
$8.5M
GENETICS AND PHYSIOLOGY OF ORAL BIOFILMSR01DE013239 · NIDCR · UNIVERSITY OF ROCHESTER · PI BURNE, ROBERT A · 1999 to 2019
$6.6M
LuxS-Mediated Quorum Sensing in Streptococcus mutansR03DE015501 · NIDCR · UNIVERSITY OF FLORIDA · PI WEN, ZEZHANG TOM · 2003 to 2004
$145k
NIDCR NIH HHS DE12236NIDCR NIH HHS DE13239NIDCR NIH HHS DE15501NIDCR NIH HHS R01 DE012236NIDCR NIH HHS R01 DE013239NIDCR NIH HHS R03 DE015501
6 · The paper itself

Abstract

We previously reported that LuxS in Streptococcus mutans is involved in stress tolerance and biofilm formation. In this study, flowcells and confocal laser scanning microscopy were used to further examine the effects of LuxS-deficiency on biofilm formation. Similar to the wild-type strain (UA159), a strain deficient in LuxS (TW26D) bound efficiently to the flowcells and formed microcolonies 4 h after inoculation. Unlike UA159, which accumulated and formed compact, evenly distributed biofilms after 28 h, TW26D showed only loose, sporadic, thin biofilms. DNA microarray analysis revealed alterations in transcription of more than 60 genes in TW26D biofilms by at least 1.5-fold (P < 0.001). Among the upregulated genes were those for sugar-specific enzymes II of the phosphotransferase (PTS) system and the atp operon, which codes for the proton-pumping F-ATPase. Of the downregulated genes, several encode proteins with putative functions in DNA repair. Mutation of selected genes caused severe defects in the ability of the mutants to tolerate low pH and oxidative stress. These results provide additional proof that LuxS-deficiency causes global alterations in the expression of genes central to biofilm formation and virulence of S. mutans, including those involved in energy metabolism, DNA repair and stress tolerance.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsBacteriological TechniquesBiofilmsCarbon-Sulfur LyasesDNA RepairDown-RegulationGene Expression ProfilingHumansHydrogen-Ion ConcentrationHydrogen PeroxideImage Processing, Computer-AssistedMicroscopy, ConfocalMutationOligonucleotide Array Sequence AnalysisAdenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsCarbon-Sulfur LyasesHydrogen PeroxideLuxS protein, BacteriaOxidantsPhosphoenolpyruvate Sugar Phosphotransferase SystemProton Pumps

Identifiers

PMID21214869
PMCPMC3105442
OpenAlexW1587553111

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.