Evidence map›Paper›PMID 21213076›Full record

ArticleBiomolecular NMR assignments2011

Sequence-specific 1H, 13C and 15N assignments of the phosphoesterase (PE) domain of Pseudomonas aeruginosa DNA ligase D (LigD).

Kaushik Dutta, Aswin Natarajan, Pravin A Nair, Stewart Shuman, Ranajeet Ghose

Abstract read
In one paragraph

Article in Biomolecular NMR assignments, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kaushik DuttaThe New York Structural Biology Center, 89 Convent Avenue, New York, NY 10027, USA.
Aswin Natarajan
Pravin A Nair
Stewart Shuman
Ranajeet Ghose
City University of New York · USKettering University · USNew York Structural Biology Center · US

Funding

TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI WALLMAN, JOSHUA · 1985 to 2011
$26.1M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Viral DNA and RNA LigasesR01GM063611 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SHUMAN, STEWART H · 2001 to 2017
$5.4M
NCRR NIH HHS 5G12 RR03060NCRR NIH HHS G12 RR003060NIGMS NIH HHS GM63611NIGMS NIH HHS R01 GM063611NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

DNA ligase D (LigD), consisting of polymerase, ligase and phosphoesterase domains, is the essential catalyst of the bacterial non-homologous end-joining pathway of DNA double-strand break repair. The phosphoesterase (PE) module performs manganese-dependent 3'-phosphomonoesterase and 3'-ribonucleoside resection reactions that heal broken ends in preparation for sealing. LigD PE exemplifies a structurally and mechanistically unique class of DNA end-processing enzymes. Here, we present the resonance assignments of the PE domain of Pseudomonas aeruginosa LigD comprising the N-terminal 177 residues.

Indexed as

Nuclear Magnetic Resonance, BiomolecularBacterial ProteinsCarbon IsotopesDNA LigasesDNA RepairNitrogen IsotopesPhosphoric Monoester HydrolasesProtein Structure, TertiaryPseudomonas aeruginosaBacterial ProteinsCarbon IsotopesDNA LigasesNitrogen IsotopesPhosphoric Monoester Hydrolases

Identifiers

PMID21213076
PMCPMC4156853
OpenAlexW2066260926

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.