Evidence map›Paper›PMID 21211507›Full record

ArticleAnalytical biochemistry2011

An expression system for screening of proteins for glycan and protein interactions.

Diana M E Otto, Maria A Campanero-Rhodes, Rositsa Karamanska, Andrew K Powell, Nicolai Bovin, Jeremy E Turnbull, Robert A Field, Jonathan Blackburn, Ten Feizi, Paul R Crocker

Abstract read
In one paragraph

Article in Analytical biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. A Human Lectin Microarray for Sperm Surface Glycosylation Analysis.Molecular & cellular proteomics : MCP · 2016
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Diana M E OttoDivision of Cell Biology and Immunology, Wellcome Trust Biocentre, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Maria A Campanero-Rhodes
Rositsa Karamanska
Andrew K Powell
Nicolai Bovin
Jeremy E Turnbull
Robert A Field
Jonathan Blackburn
Ten Feizi
Paul R Crocker

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000C0618Wellcome Trust 081882
6 · The paper itself

Abstract

Here we describe a versatile high-throughput expression system that permits genome-wide screening of type 1 membrane and secreted proteins for interactions with glycans and proteins using both cell-expressed and soluble forms of the expressed proteins. Based on Gateway cloning methodology, we have engineered a destination vector that directs expression of enhanced green fluorescent protein (EGFP)-tagged proteins at the cell surface via a glycosylphosphatidylinositol tail. The EGFP fusion proteins can then be cleaved with PreScission protease to release soluble forms of proteins that can be optionally biotinylated. We demonstrate the utility of this cloning and expression system for selected low-affinity membrane lectins from the siglec family of sialic acid-binding immunoglobulin-like lectins, for the glycosaminoglycan-binding proteins FGF-1 and BACE, and for the heterotypic adhesion molecules JAM-B and JAM-C. Cell-expressed proteins can be evaluated for glycan interactions using polyvalent soluble glycan probes and for protein interactions using either cells or soluble proteins. Following cleavage from the cell surface, proteins were complexed in solution and sufficient avidity was achieved to measure weak protein-glycan and weak protein-protein interactions using glycan arrays and surface plasmon resonance, respectively.

Indexed as

Aspartic Acid EndopeptidasesCarbohydrate SequenceCell Adhesion MoleculesFibroblast Growth Factor 1Green Fluorescent ProteinsLectinsMembrane ProteinsMolecular Sequence DataPolysaccharidesProtein Array AnalysisProtein BindingRecombinant Fusion ProteinsSialic Acid Binding Immunoglobulin-like LectinsSurface Plasmon ResonanceAspartic Acid EndopeptidasesCell Adhesion Moleculesenhanced green fluorescent proteinFibroblast Growth Factor 1Green Fluorescent ProteinsLectinsMembrane ProteinsPolysaccharidesRecombinant Fusion ProteinsSialic Acid Binding Immunoglobulin-like Lectins

Identifiers

PMID21211507
PMCPMC3740237

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.