Evidence map›Paper›PMID 21209361›Full record

ArticleAmerican journal of physiology. Cell physiology2011

A practical guide to evaluating colocalization in biological microscopy.

Kenneth W Dunn, Malgorzata M Kamocka, John H McDonald

Abstract read
In one paragraph

Article in American journal of physiology. Cell physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,157 papers.

0numbers the graph read from it
0cells of the map it votes in
1,157citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,157 citing papers in PubMed.

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  10. Molecular mechanisms underlying FCCP-induced mitophagy in human airway smooth muscle cells.American journal of physiology. Lung cellular and molecular physiology · 2026
    Article
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1,097 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kenneth W DunnDept. of Medicine, Division of Nephrology, Indiana Univ. Medical Center, Indianapolis, IN 46202, USA. kwdunn@iupui.edu
Malgorzata M Kamocka
John H McDonald

Funding

Pilot--Using Zebrafish Model of Pronephros DevelopmentP50DK061594 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MOLITORIS, BRUCE A · 2002 to 2006
$5.3M
Endocytic transport in cultured renal epitheliaR01DK051098 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNN, KENNETH W · 2002 to 2005
$1.0M
ENDOCYTOSIS IN CULTURED RENAL EPITHELIAR29DK051098 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNN, KENNETH W · 1996 to 2000
$113k
NIDDK NIH HHS DK-51098NIDDK NIH HHS DK-61594NIDDK NIH HHS P50 DK061594NIDDK NIH HHS R01 DK051098NIDDK NIH HHS R29 DK051098
6 · The paper itself

Abstract

Fluorescence microscopy is one of the most powerful tools for elucidating the cellular functions of proteins and other molecules. In many cases, the function of a molecule can be inferred from its association with specific intracellular compartments or molecular complexes, which is typically determined by comparing the distribution of a fluorescently labeled version of the molecule with that of a second, complementarily labeled probe. Although arguably the most common application of fluorescence microscopy in biomedical research, studies evaluating the "colocalization" of two probes are seldom quantified, despite a diversity of image analysis tools that have been specifically developed for that purpose. Here we provide a guide to analyzing colocalization in cell biology studies, emphasizing practical application of quantitative tools that are now widely available in commercial and free image analysis software.

Indexed as

BiologyFluorescent DyesImage Interpretation, Computer-AssistedImmunohistochemistryMicroscopy, FluorescenceSoftwareFluorescent Dyes

Identifiers

PMID21209361
PMCPMC3074624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.