Evidence map›Paper›PMID 21208937›Full record

SynthesisHuman molecular genetics2011

Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.

Irene Pichler, Cosetta Minelli, Serena Sanna, Toshiko Tanaka, Christine Schwienbacher, Silvia Naitza, Eleonora Porcu, Cristian Pattaro, Fabio Busonero, Alessandra Zanon and 22 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 4 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 4 syntheses or guidelines pooled it, 76 citations in OpenAlex.

  1. Pooled it
  2. Genetic comorbidities in Parkinson's disease.Human molecular genetics · 2014
    Pooled it
  3. Pooled it
  4. Pooled it
  5. Genetic factors associated with iron storage in Australian blood donors.Blood transfusion = Trasfusione del sangue · 2018
    Trial
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Ethnic Differences in Iron Status.Advances in nutrition (Bethesda, Md.) · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Nutrition, genetic variation and male fertility.Translational andrology and urology · 2021
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 12 institutions in 4 countries.

Irene PichlerInstitute of Genetic Medicine, European Academy Bozen/Bolzano, 39100 Bolzano, Italy.
Cosetta Minelli
Serena Sanna
Toshiko Tanaka
Christine Schwienbacher
Silvia Naitza
Eleonora Porcu
Cristian Pattaro
Fabio Busonero
Alessandra Zanon
Andrea Maschio
Scott A Melville
Maria Grazia Piras
Dan L Longo
Jack Guralnik
Dena Hernandez
Stefania Bandinelli
Elmar Aigner
Anthony T Murphy
Victor Wroblewski
Fabio Marroni
Igor Theurl
Carsten Gnewuch
Eric Schadt
Manfred Mitterer
David Schlessinger
Luigi Ferrucci
Derrick R Witcher
Andrew A Hicks
Günter Weiss
Manuela Uda
Peter P Pramstaller
Institute of Genetic and Biomedical Research · ITNational Institute on Aging · USUniversity of Lübeck · DEEli Lilly (United States) · USEurac Research · ITInnsbruck Medical University · ATAzienda Sanitaria di Firenze · ITOspedale di Bolzano · ITPacific Biosciences (United States) · USSalzburger Landeskliniken · ATUniversity of Ferrara · ITUniversity of Regensburg · DE

Funding

THE BALTIMORE LONGITUDINAL STUDY OF HUMAN AGINGZ01AG000015 · NIA · NATIONAL INSTITUTE ON AGING · PI FERRUCCI, LUIGI · 1985 to 2008
$11.4M
Aging-related Traits and Disease Risk Factors in a Sardinian Population CohortZIAAG000675 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2021
$5.7M
The InChianti StudyZIAAG001050 · NIA · NATIONAL INSTITUTE ON AGING · PI FERRUCCI, LUIGI · 2009 to 2025
$2.1M
Intramural NIH HHSNIA NIH HHS N01-AG-1-2109NIA NIH HHS Z01AG000015-50
6 · The paper itself

Abstract

The genetic determinants of variation in iron status are actively sought, but remain incompletely understood. Meta-analysis of two genome-wide association (GWA) studies and replication in three independent cohorts was performed to identify genetic loci associated in the general population with serum levels of iron and markers of iron status, including transferrin, ferritin, soluble transferrin receptor (sTfR) and sTfR-ferritin index. We identified and replicated a novel association of a common variant in the type-2 transferrin receptor (TFR2) gene with iron levels, with effect sizes highly consistent across samples. In addition, we identified and replicated an association between the HFE locus and ferritin and confirmed previously reported associations with the TF, TMPRSS6 and HFE genes. The five replicated variants were tested for association with expression levels of the corresponding genes in a publicly available data set of human liver samples, and nominally statistically significant expression differences by genotype were observed for all genes, although only rs3811647 in the TF gene survived the Bonferroni correction for multiple testing. In addition, we measured for the first time the effects of the common variant in TMPRSS6, rs4820268, on hepcidin mRNA in peripheral blood (n = 83 individuals) and on hepcidin levels in urine (n = 529) and observed an association in the same direction, though only borderline significant. These functional findings require confirmation in further studies with larger sample sizes, but they suggest that common variants in TMPRSS6 could modify the hepcidin-iron feedback loop in clinically unaffected individuals, thus making them more susceptible to imbalances of iron homeostasis.

Indexed as

Genetic VariationAdultAgedAged, 80 and overCross-Sectional StudiesFemaleHumansIronMaleMiddle AgedPolymorphism, Single NucleotideReceptors, TransferrinYoung AdultIronReceptors, TransferrinTFR2 protein, human

Identifiers

PMID21208937
PMCPMC3043660
OpenAlexW2138455853

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.