Evidence map›Paper›PMID 21208290›Full record

ArticleFEMS immunology and medical microbiology2011

ALS51, a newly discovered gene in the Candida albicans ALS family, created by intergenic recombination: analysis of the gene and protein, and implications for evolution of microbial gene families.

Xiaomin Zhao, Soon-Hwan Oh, David A Coleman, Lois L Hoyer

Open access · bronzeAbstract read
In one paragraph

Article in FEMS immunology and medical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Review
  9. Agglutinin-Like Sequence (Frontiers in microbiology · 2019
    Article
  10. Review
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  12. Article
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  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Xiaomin ZhaoDepartment of Pathobiology, University of Illinois, Urbana, IL, USA.
Soon-Hwan Oh
David A Coleman
Lois L Hoyer
University of Illinois Urbana-Champaign · US

Funding

THE ALS GENE FAMILY OF CANDIDA ALBICANSR01DE014158 · NIDCR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HOYER, LOIS L. · 2000 to 2010
$3.0M
UIUC COLLEGE VET MED COMPLETION SHELL SPACEC06RR016515 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI WHITELEY, HERBERT E · 2001 to 2001
$1.5M
NCRR NIH HHS C06 RR016515NCRR NIH HHS RR16515-01NIDCR NIH HHS R01 DE014158NIDCR NIH HHS R01 DE14158
6 · The paper itself

Abstract

The Candida albicans ALS family has eight genetic loci, each encoding a large glycoprotein. Als protein function is discussed most frequently in terms of adhesion to host and abiotic surfaces. Analyses of C. albicans strain WO-1 indicated variation within the ALS1 locus compared with other isolates such as SC5314. Investigation revealed a recombination between the contiguous ALS5 and ALS1 loci to generate a new coding region, named ALS51, because it encodes the 5' domain of ALS5 fused in-frame to the tandem repeat region and 3' domain of ALS1. ALS51 was detected in 11 isolates (4.6%) from a collection of 239 C. albicans strains of diverse origin and clade assignment. The 12 ALS51-positive strains identified in this study represented three different ALS family genotypes with respect to the presence and copy number of ALS51, ALS5 and ALS1. ALS51 transcription was detected by real-time reverse-transcription-PCR in WO-1. Although the cell-surface abundance of Als51 on WO-1 and Als5 on SC5314 was too low to visualize by indirect immunofluorescence using an anti-Als5 monoclonal antibody, both proteins were observed on Western blots of β-1,6-glucanase-digested C. albicans cell walls. Characterization of ALS51 illustrates one of the recombination mechanisms that generate diversity within C. albicans gene families.

Indexed as

Recombination, GeneticCandida albicansDNA, FungalEvolution, MolecularFungal ProteinsGene DosageGene FusionHumansMolecular Sequence DataMultigene FamilyRepetitive Sequences, Nucleic AcidSequence Analysis, DNADNA, FungalFungal Proteins

Identifiers

PMID21208290
PMCPMC3842030
OpenAlexW1603793235

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.