Evidence map›Paper›PMID 21206914›Full record

ArticlePloS one2010

Different patterns of evolution in the centromeric and telomeric regions of group A and B haplotypes of the human killer cell Ig-like receptor locus.

Chul-Woo Pyo, Lisbeth A Guethlein, Quyen Vu, Ruihan Wang, Laurent Abi-Rached, Paul J Norman, Steven G E Marsh, Jeffrey S Miller, Peter Parham, Daniel E Geraghty

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 240 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. DonorFrontiers in immunology · 2024
    Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Chul-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Lisbeth A Guethlein
Quyen Vu
Ruihan Wang
Laurent Abi-Rached
Paul J Norman
Steven G E Marsh
Jeffrey S Miller
Peter Parham
Daniel E Geraghty
Fred Hutch Cancer Center · USStanford University · USAnthony Nolan · GBUniversity of Minnesota · US

Funding

Therapeutic Potential of Adaptive NK Cells in Cancer and TransplantationP01CA111412 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MILLER, JEFFREY S. · 2005 to 2025
$38.2M
Genetics management and analysis tools: GeMSR42RR018669 · NCRR · SCISIO GENETICS, INC. · PI GERAGHTY, THOMAS P · 2007 to 2009
$1.6M
Management software for genetic analysis GeMSR41RR018669 · NCRR · IMMUNOGENOMICS, INC. · PI GERAGHTY, THOMAS P · 2004 to 2004
$100k
NCI NIH HHS CA111412NCI NIH HHS P01 CA111412NCRR NIH HHS R41 RR018669NCRR NIH HHS R42 RR018669NCRR NIH HHS RR018669
6 · The paper itself

Abstract

The fast evolving human KIR gene family encodes variable lymphocyte receptors specific for polymorphic HLA class I determinants. Nucleotide sequences for 24 representative human KIR haplotypes were determined. With three previously defined haplotypes, this gave a set of 12 group A and 15 group B haplotypes for assessment of KIR variation. The seven gene-content haplotypes are all combinations of four centromeric and two telomeric motifs. 2DL5, 2DS5 and 2DS3 can be present in centromeric and telomeric locations. With one exception, haplotypes having identical gene content differed in their combinations of KIR alleles. Sequence diversity varied between haplotype groups and between centromeric and telomeric halves of the KIR locus. The most variable A haplotype genes are in the telomeric half, whereas the most variable genes characterizing B haplotypes are in the centromeric half. Of the highly polymorphic genes, only the 3DL3 framework gene exhibits a similar diversity when carried by A and B haplotypes. Phylogenetic analysis and divergence time estimates, point to the centromeric gene-content motifs that distinguish A and B haplotypes having emerged ~6 million years ago, contemporaneously with the separation of human and chimpanzee ancestors. In contrast, the telomeric motifs that distinguish A and B haplotypes emerged more recently, ~1.7 million years ago, before the emergence of Homo sapiens. Thus the centromeric and telomeric motifs that typify A and B haplotypes have likely been present throughout human evolution. The results suggest the common ancestor of A and B haplotypes combined a B-like centromeric region with an A-like telomeric region.

Indexed as

HaplotypesAllelesAmino Acid MotifsCentromereGene LibraryGenetic VariationHumansImmunoglobulinsPhylogenyReceptors, KIRRecombination, GeneticSequence Analysis, DNATelomereImmunoglobulinsReceptors, KIR

Identifiers

PMID21206914
PMCPMC3012066
OpenAlexW2119589843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.