Evidence map›Paper›PMID 21205822›Full record

ArticleThe Journal of biological chemistry2011

Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants.

Chak Han Im, Sung Min Hwang, Young Sim Son, Jae Bok Heo, Woo Young Bang, I Nengah Suwastika, Takashi Shiina, Jeong Dong Bahk

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Chak Han ImFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea.
Sung Min HwangFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea.
Young Sim SonFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea.
Jae Bok HeoFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea.
Woo Young BangFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea.
I Nengah Suwastikathe Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and.
Takashi Shiinathe Graduate School of Human and Environmental Sciences, Kyoto Prefectural University, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan.
Jeong Dong BahkFrom the Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea,. Electronic address: jdbahk@gnu.ac.kr.
Kyoto Prefectural University · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The YlqF/YawG families are important GTPases involved in ribosome biogenesis, cell proliferation, or cell growth, however, no plant homologs have yet to be characterized. Here we isolated rice (Oryza sativa) and Arabidopsis nuclear/nucleolar GTPase 2 (OsNug2 and AtNug2, respectively) that belong to the YawG subfamily and characterized them for pre-60S ribosomal subunit maturation. They showed typical intrinsic YlqF/YawG family GTPase activities in bacteria and yeasts with k(cat) values 0.12 ± 0.007 min(-1) (n = 6) and 0.087 ± 0.002 min(-1) (n = 4), respectively, and addition of 60S ribosomal subunits stimulated their activities in vitro. In addition, OsNug2 rescued the lethality of the yeast nug2 null mutant through recovery of 25S pre-rRNA processing. By yeast two-hybrid screening five clones, including a putative one of 60S ribosomal proteins, OsL10a, were isolated. Subcellular localization and pulldown assays resulted in that the N-terminal region of OsNug2 is sufficient for nucleolar/nuclear targeting and association with OsL10a. OsNug2 is physically associated with pre-60S ribosomal complexes highly enriched in the 25S, 5.8S, and 5S rRNA, and its interaction was stimulated by exogenous GTP. Furthermore, the AtNug2 knockdown mutant constructed by the RNAi method showed defective growth on the medium containing cycloheximide. Expression pattern analysis revealed that the distribution of AtNug2 mainly in the meristematic region underlies its potential role in active plant growth. Finally, it is concluded that Nug2/Nog2p GTPase from mono- and didicotyledonous plants is linked to the pre-60S ribosome complex and actively processed 27S into 25S during the ribosomal large subunit maturation process, i.e. prior to export to the cytoplasm.

Indexed as

Active Transport, Cell NucleusArabidopsisCell NucleusGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenetic Complementation TestGTP PhosphohydrolasesMeristemNuclear ProteinsOryzaPlant ProteinsRibosome Subunits, Large, EukaryoticRNA, PlantRNA, RibosomalSaccharomyces cerevisiaeGTP PhosphohydrolasesNuclear ProteinsPlant ProteinsRNA, PlantRNA, Ribosomal

Identifiers

PMID21205822
PMCPMC3048744
OpenAlexW1966551301

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.