Evidence map›Paper›PMID 21203500›Full record

ArticlePLoS genetics2010

Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1α as a master regulator of plasma protein fucosylation.

Gordan Lauc, Abdelkader Essafi, Jennifer E Huffman, Caroline Hayward, Ana Knežević, Jayesh J Kattla, Ozren Polašek, Olga Gornik, Veronique Vitart, Jodie L Abrahams and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed, 3 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 3 syntheses or guidelines pooled it, 252 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Review
  6. Article
  7. The Intersection of Glycosylation and Ferroptosis in Cancer.Antioxidants (Basel, Switzerland) · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Glycosylation in aging and neurodegenerative diseases.Acta biochimica et biophysica Sinica · 2024
    Review
  15. Regulation of the Lewis Blood Group Antigen Expression: A Literature Review Supplemented with Computational Analysis.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2024
    Review
  16. The Human BloodJACS Au · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Review

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 5 countries.

Gordan LaucGlycobiology Laboratory, Genos Ltd., Zagreb, Croatia.
Abdelkader Essafi
Jennifer E Huffman
Caroline Hayward
Ana Knežević
Jayesh J Kattla
Ozren Polašek
Olga Gornik
Veronique Vitart
Jodie L Abrahams
Maja Pučić
Mislav Novokmet
Irma Redžić
Susan Campbell
Sarah H Wild
Fran Borovečki
Wei Wang
Ivana Kolčić
Lina Zgaga
Ulf Gyllensten
James F Wilson
Alan F Wright
Nicholas D Hastie
Harry Campbell
Pauline M Rudd
Igor Rudan
University of Zagreb · HRWestern General Hospital · GBMRC Centre for Reproductive Health · GBUniversity College Dublin · IEGenos (Croatia) · HRCapital Medical University · CNUppsala University · SE

Funding

Chief Scientist Office CZB/4/710Chief Scientist Office CZB/4/728Medical Research Council MC_U127561128Wellcome Trust
6 · The paper itself

Abstract

Over half of all proteins are glycosylated, and alterations in glycosylation have been observed in numerous physiological and pathological processes. Attached glycans significantly affect protein function; but, contrary to polypeptides, they are not directly encoded by genes, and the complex processes that regulate their assembly are poorly understood. A novel approach combining genome-wide association and high-throughput glycomics analysis of 2,705 individuals in three population cohorts showed that common variants in the Hepatocyte Nuclear Factor 1α (HNF1α) and fucosyltransferase genes FUT6 and FUT8 influence N-glycan levels in human plasma. We show that HNF1α and its downstream target HNF4α regulate the expression of key fucosyltransferase and fucose biosynthesis genes. Moreover, we show that HNF1α is both necessary and sufficient to drive the expression of these genes in hepatic cells. These results reveal a new role for HNF1α as a master transcriptional regulator of multiple stages in the fucosylation process. This mechanism has implications for the regulation of immunity, embryonic development, and protein folding, as well as for our understanding of the molecular mechanisms underlying cancer, coronary heart disease, and metabolic and inflammatory disorders.

Indexed as

Gene Expression RegulationGenome-Wide Association StudyGenomicsGlycomicsAdolescentAdultAgedAged, 80 and overBlood ProteinsCohort StudiesFemaleFucoseFucosyltransferasesHepatocyte Nuclear Factor 1-alphaHepatocytesHep G2 CellsBlood ProteinsFucoseFucosyltransferasesFUT6 protein, humanGlycoprotein 6-alpha-L-fucosyltransferaseHepatocyte Nuclear Factor 1-alphaPolysaccharides

Identifiers

PMID21203500
PMCPMC3009678
OpenAlexW2104785679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.