Evidence map›Paper›PMID 21203445›Full record

ArticlePloS one2010

ATL9, a RING zinc finger protein with E3 ubiquitin ligase activity implicated in chitin- and NADPH oxidase-mediated defense responses.

Marta Berrocal-Lobo, Sophia Stone, Xin Yang, Jay Antico, Judy Callis, Katrina M Ramonell, Shauna Somerville

Abstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Gene Mapping and Genetic Analysis of Maize Resistance to Stalk Rot.International journal of molecular sciences · 2025
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  6. Review
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  10. Glutathione Contribution in Interactions betweenInternational journal of molecular sciences · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Journal of fungi (Basel, Switzerland) · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marta Berrocal-LoboDepartment of Plant Biology, Carnegie Institution, Stanford, California, United States of America.
Sophia Stone
Xin Yang
Jay Antico
Judy Callis
Katrina M Ramonell
Shauna Somerville

Funding

Characterization of mutants affected in innate immunityR15GM073630 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI RAMONELL, KATRINA M · 2005 to 2005
$196k
NIGMS NIH HHS 1-R15-GM073630-01NIGMS NIH HHS R15 GM073630
6 · The paper itself

Abstract

Pathogen associated molecular patterns (PAMPs) are signals detected by plants that activate basal defenses. One of these PAMPs is chitin, a carbohydrate present in the cell walls of fungi and in insect exoskeletons. Previous work has shown that chitin treatment of Arabidopsis thaliana induced defense-related genes in the absence of a pathogen and that the response was independent of the salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) signaling pathways. One of these genes is ATL9 ( = ATL2G), which encodes a RING zinc-finger like protein. In the current work we demonstrate that ATL9 has E3 ubiquitin ligase activity and is localized to the endoplasmic reticulum. The expression pattern of ATL9 is positively correlated with basal defense responses against Golovinomyces cichoracearum, a biotrophic fungal pathogen. The basal levels of expression and the induction of ATL9 by chitin, in wild type plants, depends on the activity of NADPH oxidases suggesting that chitin-mediated defense response is NADPH oxidase dependent. Although ATL9 expression is not induced by treatment with known defense hormones (SA, JA or ET), full expression in response to chitin is compromised slightly in mutants where ET- or SA-dependent signaling is suppressed. Microarray analysis of the atl9 mutant revealed candidate genes that appear to act downstream of ATL9 in chitin-mediated defenses. These results hint at the complexity of chitin-mediated signaling and the potential interplay between elicitor-mediated signaling, signaling via known defense pathways and the oxidative burst.

Indexed as

Gene Expression Regulation, EnzymologicGene Expression Regulation, PlantAmino Acid SequenceArabidopsisChitinCyclopentanesEndoplasmic ReticulumEthylenesMolecular Sequence DataMutationNADPH OxidasesOxylipinsSalicylic AcidSequence Homology, Amino AcidSignal TransductionUbiquitin-Protein LigasesATL9 protein, ArabidopsisChitinCyclopentanesethyleneEthylenesjasmonic acidNADPH OxidasesOxylipinsSalicylic AcidUbiquitin-Protein Ligases

Identifiers

PMID21203445
PMCPMC3009710

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.