Evidence map›Paper›PMID 21203399›Full record

ArticlePloS one2010

Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis.

Haichun Gao, Xiaohu Wang, Zamin K Yang, Jingrong Chen, Yili Liang, Haijiang Chen, Timothy Palzkill, Jizhong Zhou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The ArcAB Two-Component System: Function in Metabolism, Redox Control, and Infection.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  10. Article
  11. Life (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Complex Oxidation of ApocytochromesApplied and environmental microbiology · 2019
    Article
  16. Article
  17. CytochromesApplied and environmental microbiology · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Haichun GaoInstitute of Microbiology and College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China. haichung@zju.edu.cn
Xiaohu Wang
Zamin K Yang
Jingrong Chen
Yili Liang
Haijiang Chen
Timothy Palzkill
Jizhong Zhou
University of Oklahoma · USBaylor College of Medicine · USZhejiang University · CNOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the genome of Shewanella oneidensis, genes encoding the global regulators ArcA, Crp, and EtrA have been identified. All these proteins deviate from their counterparts in E. coli significantly in terms of functionality and regulon. It is worth investigating the involvement and relationship of these global regulators in aerobic and anaerobic respiration in S. oneidensis. In this study, the impact of the transcriptional factors ArcA, Crp, and EtrA on aerobic and anaerobic respiration in S. oneidensis were assessed. While all these proteins appeared to be functional in vivo, the importance of individual proteins in these two major biological processes differed. The ArcA transcriptional factor was critical in aerobic respiration while the Crp protein was indispensible in anaerobic respiration. Using a newly developed reporter system, it was found that expression of arcA and etrA was not influenced by growth conditions but transcription of crp was induced by removal of oxygen. An analysis of the impact of each protein on transcription of the others revealed that Crp expression was independent of the other factors whereas ArcA repressed both etrA and its own transcription while EtrA also repressed arcA transcription. Transcriptional levels of arcA in the wild type, crp, and etrA strains under either aerobic or anaerobic conditions were further validated by quantitative immunoblotting with a polyclonal antibody against ArcA. This extensive survey demonstrated that all these three global regulators are functional in S. oneidensis. In addition, the reporter system constructed in this study will facilitate in vivo transcriptional analysis of targeted promoters.

Indexed as

Bacterial Outer Membrane ProteinsBacterial Proteinsbeta-GalactosidaseCyclic AMP Receptor ProteinEscherichia coli ProteinsGene DeletionGenes, ReporterHemeLac OperonModels, GeneticMutationOxygenPhenotypePlasmidsRepressor ProteinsShewanellaarcA protein, E coliBacterial Outer Membrane ProteinsBacterial Proteinsbeta-Galactosidasecrp protein, E coliCyclic AMP Receptor ProteinEscherichia coli ProteinsEtrA protein, ShewanellaHemeOxygenRepressor ProteinsTranscription Factors

Identifiers

PMID21203399
PMCPMC3011009
OpenAlexW2139295216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.