Evidence map›Paper›PMID 21199253›Full record

ArticleEnvironmental microbiology2011

Global patterns in the biogeography of bacterial taxa.

Diana R Nemergut, Elizabeth K Costello, Micah Hamady, Catherine Lozupone, Lin Jiang, Steven K Schmidt, Noah Fierer, Alan R Townsend, Cory C Cleveland, Lee Stanish and 1 more

Abstract read
In one paragraph

Article in Environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 163 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Taxonomic and biosynthetic diversity of the marine actinomyceteApplied and environmental microbiology · 2026
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103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Diana R NemergutInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Elizabeth K CostelloInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Micah HamadyInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Catherine LozuponeInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Lin JiangInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Steven K SchmidtInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Noah FiererInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Alan R TownsendInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Cory C ClevelandInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Lee StanishInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.
Rob KnightInstitute of Arctic and Alpine Research,Environmental Studies Program,Department of Chemistry and BiochemistryDepartment of Computer ScienceDepartment of Ecology and Evolutionary BiologyCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT 59812.

Funding

Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
NIGMS NIH HHS T32 GM065103
6 · The paper itself

Abstract

Bacteria control major nutrient cycles and directly influence plant, animal and human health. However, we know relatively little about the forces shaping their large-scale ecological ranges. Here, we reveal patterns in the distribution of individual bacterial taxa at multiple levels of phylogenetic resolution within and between Earth's major habitat types. Our analyses suggest that while macro-scale habitats structure bacterial distribution to some degree, abundant bacteria (i.e. detectable using 16S rRNA gene sequencing methods) are confined to single assemblages. Additionally, we show that the most cosmopolitan taxa are also the most abundant in individual assemblages. These results add to the growing body of data that support that the diversity of the overall bacterial metagenome is tremendous. The mechanisms governing microbial distribution remain poorly understood, but our analyses provide a framework with which to test the importance of macro-ecological environmental gradients, relative abundance, neutral processes and the ecological strategies of individual taxa in structuring microbial communities.

Indexed as

EcosystemMetagenomePhylogenyBacteriaEcologyGenes, BacterialGeographyRNA, Ribosomal, 16SSoil MicrobiologyRNA, Ribosomal, 16S

Identifiers

PMID21199253
PMCPMC5834236

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.