Evidence map›Paper›PMID 21197656›Full record

ReviewWiley interdisciplinary reviews. Systems biology and medicine

A multifaceted approach to modeling the immune response in tuberculosis.

Simeone Marino, Jennifer J Linderman, Denise E Kirschner

Open access · greenAbstract readReview
In one paragraph

Review in Wiley interdisciplinary reviews. Systems biology and medicine. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Characterizing the immune response toFrontiers in immunology · 2024
    Review
  4. Cellular and molecular bioengineering · 2021
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Modeling Rabbit Responses to Single and Multiple Aerosol Exposures of Bacillus anthracis Spores.Risk analysis : an official publication of the Society for Risk Analysis · 2017
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. A multi-scale approach to designing therapeutics for tuberculosis.Integrative biology : quantitative biosciences from nano to macro · 2015
    Article
  16. Article
  17. Article
  18. Modeling tuberculosis in nonhuman primates.Cold Spring Harbor perspectives in medicine · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Simeone MarinoDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Jennifer J Linderman
Denise E Kirschner
University of Michigan–Ann Arbor · US

Funding

Modeling Immunity for BiodefenseN01AI50018 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI STEINMETZ, KAREN · 2008 to 2011
$3.5M
A multi-scale model to predict outcomes of immunomodulation and drug therapy duriR01EB012579 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FLYNN, JOANNE L., KIRSCHNER, DENISE E · 2011 to 2014
$2.3M
The dynamics of granuloma formation in tuberculosisR01HL068526 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIRSCHNER, DENISE E · 2001 to 2005
$2.3M
"MSM" A multi-scale approach for understanding antigen presentation in immunityR01LM009027 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIRSCHNER, DENISE E · 2005 to 2007
$1.1M
A multi-scale and multi-system approach to understand granuloma formation in TBR33HL092853 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIRSCHNER, DENISE E · 2008 to 2010
$684k
A multi-scale and multi-system approach to understand granuloma formation in TBR33HL092844 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LINDERMAN, JENNIFER JEAN · 2008 to 2010
$656k
NHLBI NIH HHS R01 HL068526NHLBI NIH HHS R33 HL092844NHLBI NIH HHS R33HL092844NHLBI NIH HHS R33 HL092853NHLBI NIH HHS R33HL092853NIAID NIH HHS N01 AI050018NIAID NIH HHS N01 AI50018NIBIB NIH HHS R01 EB012579NLM NIH HHS R01 LM009027
6 · The paper itself

Abstract

Tuberculosis (TB) is a deadly infectious disease caused by Mycobacterium tuberculosis (Mtb). No available vaccine is reliable and, although treatment exists, approximately 2 million people still die each year. The hallmark of TB infection is the granuloma, a self-organizing structure of immune cells forming in the lung and lymph nodes in response to bacterial invasion. Protective immune mechanisms play a role in granuloma formation and maintenance; these act over different time/length scales (e.g., molecular, cellular, and tissue scales). The significance of specific immune factors in determining disease outcome is still poorly understood, despite incredible efforts to establish several animal systems to track infection progression and granuloma formation. Mathematical and computational modeling approaches have recently been applied to address open questions regarding host-pathogen interaction dynamics, including the immune response to Mtb infection and TB granuloma formation. This provides a unique opportunity to identify factors that are crucial to a successful outcome of infection in humans. These modeling tools not only offer an additional avenue for exploring immune dynamics at multiple biological scales but also complement and extend knowledge gained via experimental tools. We review recent modeling efforts in capturing the immune response to Mtb, emphasizing the importance of a multiorgan and multiscale approach that has tuneable resolution. Together with experimentation, systems biology has begun to unravel key factors driving granuloma formation and protective immune response in TB. WIREs Syst Biol Med 2011 3 479-489 DOI: 10.1002/wsbm.131

Indexed as

Models, BiologicalHost-Pathogen InteractionsHumansMycobacterium tuberculosisTuberculosisTumor Necrosis Factor-alphaTumor Necrosis Factor-alpha

Identifiers

PMID21197656
PMCPMC3110521
OpenAlexW2110568039

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.