ArticleComparative and functional genomics2010
Generation and Analysis of Expressed Sequence Tags from Olea europaea L.
Article in Comparative and functional genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 19 citations in OpenAlex.
- Genetic Structure and Core Collection of Olive Germplasm from Albania Revealed by Microsatellite Markers.Genes · 2021Article
- Identification and Functional Annotation of Genes Differentially Expressed in the Reproductive Tissues of the Olive Tree (Frontiers in plant science · 2017Article
- Article
- Identification and Characterization of the Iridoid Synthase Involved in Oleuropein Biosynthesis in Olive (Olea europaea) Fruits.The Journal of biological chemistry · 2016Article
- Transcript Analysis and Regulative Events during Flower Development in Olive (Olea europaea L.).PloS one · 2016Article
- ReprOlive: a database with linked data for the olive tree (Olea europaea L.) reproductive transcriptome.Frontiers in plant science · 2015Article
- De novo assembly and functional annotation of the olive (Olea europaea) transcriptome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013Article
- Nutrition metabolism plays an important role in the alternate bearing of the olive tree (Olea europaea L.).PloS one · 2013Article
- Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa.BMC genomics · 2012Article
- Generation and Analysis of Expressed Sequence Tags from Chimonanthus praecox (Wintersweet) Flowers for Discovering Stress-Responsive and Floral Development-Related Genes.Comparative and functional genomics · 2012Article
- cDNA-SRAP and its application in differential gene expression analysis: a case study in Erianthus arundinaceum.Journal of biomedicine & biotechnology · 2012Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Olive (Olea europaea L.) is an important source of edible oil which was originated in Near-East region. In this study, two cDNA libraries were constructed from young olive leaves and immature olive fruits for generation of ESTs to discover the novel genes and search the function of unknown genes of olive. The randomly selected 3840 colonies were sequenced for EST collection from both libraries. Readable 2228 sequences for olive leaf and 1506 sequences for olive fruit were assembled into 205 and 69 contigs, respectively, whereas 2478 were singletons. Putative functions of all 2752 differentially expressed unique sequences were designated by gene homology based on BLAST and annotated using BLAST2GO. While 1339 ESTs show no homology to the database, 2024 ESTs have homology (under 80%) with hypothetical proteins, putative proteins, expressed proteins, and unknown proteins in NCBI-GenBank. 635 EST's unique genes sequence have been identified by over 80% homology to known function in other species which were not previously described in Olea family. Only 3.1% of total EST's was shown similarity with olive database existing in NCBI. This generated EST's data and consensus sequences were submitted to NCBI as valuable source for functional genome studies of olive.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.