Evidence map›Paper›PMID 21194676›Full record

SynthesisAmerican journal of human genetics2011

Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height.

Matthew B Lanktree, Yiran Guo, Muhammed Murtaza, Joseph T Glessner, Swneke D Bailey, N Charlotte Onland-Moret, Guillaume Lettre, Halit Ongen, Ramakrishnan Rajagopalan, Toby Johnson and 186 more

Erratum issuedAbstract readMeta-Analysis
In one paragraph

Synthesis in American journal of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 75 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 13 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 13 syntheses or guidelines pooled it.

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  11. Blood pressure loci identified with a gene-centric array.American journal of human genetics · 2011
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  18. Loss-of-Function GHSR Variants Are Associated With Short Stature and Low IGF-I.The Journal of clinical endocrinology and metabolism · 2025
    Article
  19. Article
  20. Osteoarthritis and cartilage open · 2024
    Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
    Tomaszweski, Maciej [corrected to Tomaszewski, Maciej]
5 · Who and what money

Authors and funding

196 authors.

Matthew B LanktreeDepartment of Medicine and Biochemistry, University of Western Ontario, London, Ontario, N6A 5C1, Canada.
Yiran Guo
Muhammed Murtaza
Joseph T Glessner
Swneke D Bailey
N Charlotte Onland-Moret
Guillaume Lettre
Halit Ongen
Ramakrishnan Rajagopalan
Toby Johnson
Haiqing Shen
Christopher P Nelson
Norman Klopp
Jens Baumert
Sandosh Padmanabhan
Nathan Pankratz
James S Pankow
Sonia Shah
Kira Taylor
John Barnard
Bas J Peters
Cliona M Maloney
Maximilian T Lobmeyer
Alice Stanton
M Hadi Zafarmand
Simon P R Romaine
Amar Mehta
Erik P A van Iperen
Yan Gong
Tom S Price
Erin N Smith
Cecilia E Kim
Yun R Li
Folkert W Asselbergs
Larry D Atwood
Kristian M Bailey
Deepak Bhatt
Florianne Bauer
Elijah R Behr
Tushar Bhangale
Jolanda M A Boer
Bernhard O Boehm
Jonathan P Bradfield
Morris Brown
Peter S Braund
Paul R Burton
Cara Carty
Hareesh R Chandrupatla
Wei Chen
John Connell
Chrysoula Dalgeorgou
Anthonius de Boer
Fotios Drenos
Clara C Elbers
James C Fang
Caroline S Fox
Edward C Frackelton
Barry Fuchs
Clement E Furlong
Quince Gibson
Christian Gieger
Anuj Goel
Diederik E Grobbee
Claire Hastie
Philip J Howard
Guan-Hua Huang
W Craig Johnson
Qing Li
Marcus E Kleber
Barbara E K Klein
Ronald Klein
Charles Kooperberg
Bonnie Ky
Andrea Lacroix
Paul Lanken
Mark Lathrop
Mingyao Li
Vanessa Marshall
Olle Melander
Frank D Mentch
Nuala J Meyer
Keri L Monda
Alexandre Montpetit
Gurunathan Murugesan
Karen Nakayama
Dave Nondahl
Abiodun Onipinla
Suzanne Rafelt
Stephen J Newhouse
F George Otieno
Sanjey R Patel
Mary E Putt
Santiago Rodriguez
Radwan N Safa
Douglas B Sawyer
Pamela J Schreiner
Claire Simpson
Suthesh Sivapalaratnam
Sathanur R Srinivasan
Christine Suver
Gary Swergold
Nancy K Sweitzer
Kelly A Thomas
Barbara Thorand
Nicholas J Timpson
Sam Tischfield
Martin Tobin
Maciej Tomaszewski
Maciej Tomaszweski
W M Monique Verschuren
Chris Wallace
Bernhard Winkelmann
Haitao Zhang
Dongling Zheng
Li Zhang
Joseph M Zmuda
Robert Clarke
Anthony J Balmforth
John Danesh
Ian N Day
Nicholas J Schork
Paul I W de Bakker
Christian Delles
David Duggan
Aroon D Hingorani
Joel N Hirschhorn
Marten H Hofker
Steve E Humphries
Mika Kivimaki
Debbie A Lawlor
Kandice Kottke-Marchant
Jessica L Mega
Braxton D Mitchell
David A Morrow
Jutta Palmen
Susan Redline
Denis C Shields
Alan R Shuldiner
Patrick M Sleiman
George Davey Smith
Martin Farrall
Yalda Jamshidi
David C Christiani
Juan P Casas
Alistair S Hall
Pieter A Doevendans
Jason D Christie
Gerald S Berenson
Sarah S Murray
Thomas Illig
Gerald W Dorn
Thomas P Cappola
Eric Boerwinkle
Peter Sever
Daniel J Rader
Muredach P Reilly
Mark Caulfield
Philippa J Talmud
Eric Topol
James C Engert
Kai Wang
Anna Dominiczak
Anders Hamsten
Sean P Curtis
Roy L Silverstein
Leslie A Lange
Marc S Sabatine
Mieke Trip
Danish Saleheen
John F Peden
Karen J Cruickshanks
Winfried März
Jeffrey R O'Connell
Olaf H Klungel
Cisca Wijmenga
Anke Hilse Maitland-van der Zee
Eric E Schadt
Julie A Johnson
Gail P Jarvik
George J Papanicolaou
Hugh Watkins on behalf of PROCARDIS
Struan F A Grant
Patricia B Munroe
Kari E North
Nilesh J Samani
Wolfgang Koenig
Tom R Gaunt
Sonia S Anand
Yvonne T van der Schouw
Meena Kumari on behalf of the Whitehall II Study and the WHII 50K Group
Nicole Soranzo
Garret A Fitzgerald
Alex Reiner
Robert A Hegele
Hakon Hakonarson
Brendan J Keating

Funding

FAMILIAL AND BIRTH COHORT EFFECTS ON THE AGING SENSESR01AG021917 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI CRUICKSHANKS, KAREN J · 2004 to 2018
$25.2M
Pharmacogenomic Evaluation of Antihypertensive ResponsesU01GM074492 · NIGMS · UNIVERSITY OF FLORIDA · PI JOHNSON, JULIE A. · 2005 to 2014
$20.7M
Genetic Epidemiology of Complex TraitsZIAHG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$10.5M
Epidemiology of Age-related Hearing LossR37AG011099 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI CRUICKSHANKS, KAREN J · 2009 to 2018
$7.4M
Framingham Heart Study/FoxZIAHL006094 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI FOX, CAROLINE · 2010 to 2015
$6.9M
EPIDEMIOLOGY OF AGE-RELATED HEARING LOSSR01AG011099 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI CRUICKSHANKS, KAREN J · 1993 to 2008
$6.1M
Genomics of myocardial transcription factors in cardiac remodelingR01HL088577 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CAPPOLA, THOMAS P. · 2007 to 2013
$5.3M
Hypertension PharmacogeneticsR01HL074730 · NHLBI · UNIVERSITY OF FLORIDA · PI JOHNSON, JULIE A. · 2003 to 2006
$3.4M
The Role of Neuregulin in Human Cardiac Remodeling and Heart FailureK23HL095661 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KY, BONNIE · 2010 to 2014
$704k
British Heart Foundation RG/07/008/23674British Heart Foundation RG/08/008/25291British Heart Foundation RG/08/014/24067British Heart Foundation SP/08/002/24118CIHR 79533Medical Research Council G0100222Medical Research Council G0600705Medical Research Council G0902037Medical Research Council G19/35Medical Research Council G8802774Medical Research Council G9521010Medical Research Council MC_U137686857NHLBI NIH HHS K23 HL095661NHLBI NIH HHS L30 HL097857NHLBI NIH HHS R01 HL074730NHLBI NIH HHS R01 HL088577NIA NIH HHS R01 AG011099NIA NIH HHS R01 AG021917NIA NIH HHS R37 AG011099NIGMS NIH HHS U01 GM074492
6 · The paper itself

Abstract

Height is a classic complex trait with common variants in a growing list of genes known to contribute to the phenotype. Using a genecentric genotyping array targeted toward cardiovascular-related loci, comprising 49,320 SNPs across approximately 2000 loci, we evaluated the association of common and uncommon SNPs with adult height in 114,223 individuals from 47 studies and six ethnicities. A total of 64 loci contained a SNP associated with height at array-wide significance (p < 2.4 × 10(-6)), with 42 loci surpassing the conventional genome-wide significance threshold (p < 5 × 10(-8)). Common variants with minor allele frequencies greater than 5% were observed to be associated with height in 37 previously reported loci. In individuals of European ancestry, uncommon SNPs in IL11 and SMAD3, which would not be genotyped with the use of standard genome-wide genotyping arrays, were strongly associated with height (p < 3 × 10(-11)). Conditional analysis within associated regions revealed five additional variants associated with height independent of lead SNPs within the locus, suggesting allelic heterogeneity. Although underpowered to replicate findings from individuals of European ancestry, the direction of effect of associated variants was largely consistent in African American, South Asian, and Hispanic populations. Overall, we show that dense coverage of genes for uncommon SNPs, coupled with large-scale meta-analysis, can successfully identify additional variants associated with a common complex trait.

Indexed as

Cardiovascular SystemGenetic HeterogeneityGenetic LociPolymorphism, Single NucleotideAdultAsian PeopleBlack or African AmericanBody HeightFemaleGene FrequencyGenome-Wide Association StudyHispanic or LatinoHumansInterleukin-11MaleSmad3 ProteinInterleukin-11Smad3 ProteinSMAD3 protein, human

Identifiers

PMID21194676
PMCPMC3014369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.