Evidence map›Paper›PMID 21194482›Full record

ArticleInfectious agents and cancer2010

Epstein-Barr virus-specific methylation of human genes in gastric cancer cells.

Julie L Ryan, Richard J Jones, Shannon C Kenney, Ashley G Rivenbark, Weihua Tang, Elizabeth Rw Knight, William B Coleman, Margaret L Gulley

Open access · goldAbstract read
In one paragraph

Article in Infectious agents and cancer, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Interrelated Oncogenic Viruses and Breast Cancer.Frontiers in molecular biosciences · 2022
    Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Association betweenWorld journal of gastroenterology · 2018
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Julie L RyanDepartment of Pathology and Laboratory Medicine and the Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599-7525, USA. margaret_gulley@med.unc.edu.
Richard J Jones
Shannon C Kenney
Ashley G Rivenbark
Weihua Tang
Elizabeth Rw Knight
William B Coleman
Margaret L Gulley
University of North Carolina at Chapel Hill · USThe University of Texas MD Anderson Cancer Center · USUNC Lineberger Comprehensive Cancer CenterUniversity of Rochester · USUniversity of Wisconsin–Madison · US

Funding

REGULATION OF THE EBV BRLF1 AND BZLF1 PROMOTERSR01CA058853 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KENNEY, SHANNON CELESTE · 1993 to 2013
$3.9M
GENE THERAPY FOR AIDS RELATED CNS LYMPHOMASR01CA066519 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KENNEY, SHANNON CELESTE · 1995 to 2012
$3.7M
NCI NIH HHS R01 CA058853NCI NIH HHS R01 CA066519
6 · The paper itself

Abstract

backgroundEpstein-Barr Virus (EBV) is found in 10% of all gastric adenocarcinomas but its role in tumor development and maintenance remains unclear. The objective of this study was to examine EBV-mediated dysregulation of cellular factors implicated in gastric carcinogenesis.

methodsGene expression patterns were examined in EBV-negative and EBV-positive AGS gastric epithelial cells using a low density microarray, reverse transcription PCR, histochemical stains, and methylation-specific DNA sequencing. Expression of PTGS2 (COX2) was measured in AGS cells and in primary gastric adenocarcinoma tissues.

resultsIn array studies, nearly half of the 96 human genes tested, representing 15 different cancer-related signal transduction pathways, were dysregulated after EBV infection. Reverse transcription PCR confirmed significant impact on factors having diverse functions such as cell cycle regulation (IGFBP3, CDKN2A, CCND1, HSP70, ID2, ID4), DNA repair (BRCA1, TFF1), cell adhesion (ICAM1), inflammation (COX2), and angiogenesis (HIF1A). Demethylation using 5-aza-2'-deoxycytidine reversed the EBV-mediated dysregulation for all 11 genes listed here. For some promoter sequences, CpG island methylation and demethylation occurred in an EBV-specific pattern as shown by bisulfite DNA sequencing. Immunohistochemistry was less sensitive than was western blot for detecting downregulation of COX2 upon EBV infection. Virus-related dysregulation of COX2 levels in vitro was not recapitulated in vivo among naturally infected gastric cancer tissues.

conclusionsEBV alters human gene expression in ways that could contribute to the unique pathobiology of virus-associated cancer. Furthermore, the frequency and reversability of methylation-related transcriptional alterations suggest that demethylating agents have therapeutic potential for managing EBV-related carcinoma.

Identifiers

PMID21194482
PMCPMC3023757
OpenAlexW2133678710

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.