Evidence map›Paper›PMID 21193414›Full record

ArticleThe Journal of biological chemistry2011

Lack of collagen XVIII long isoforms affects kidney podocytes, whereas the short form is needed in the proximal tubular basement membrane.

Aino I Kinnunen, Raija Sormunen, Harri Elamaa, Lotta Seppinen, R Tyler Miller, Yoshifumi Ninomiya, Paul A Janmey, Taina Pihlajaniemi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 55 citations in OpenAlex.

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  11. Case Report: Novel Biallelic Variants in theFrontiers in neurology · 2022
    Article
  12. Review
  13. Review
  14. Complexities of the glomerular basement membrane.Nature reviews. Nephrology · 2021
    Review
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Aino I KinnunenFrom the Department of Medical Biochemistry and Molecular Biology, Oulu Center for Cell Matrix Research and.
Raija SormunenDepartment of Pathology, Biocenter Oulu, University of Oulu, 90014 Oulu, Finland.
Harri ElamaaFrom the Department of Medical Biochemistry and Molecular Biology, Oulu Center for Cell Matrix Research and.
Lotta SeppinenFrom the Department of Medical Biochemistry and Molecular Biology, Oulu Center for Cell Matrix Research and.
R Tyler Millerthe Departments of Medicine and Physiology, Louis Stokes Veterans Affairs Medical Center and Rammelkamp Center for Research and Education, Case Western Reserve University, Cleveland, 44106 Ohio.
Yoshifumi Ninomiyathe Department of Molecular Biology and Biochemistry, Graduate School of Medicine, Dentistry, and Pharmaceutical Sciences, Okayama University, Okayama 700-8558, Japan, and.
Paul A Janmeythe Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, 19104 Pennsylvania.
Taina PihlajaniemiFrom the Department of Medical Biochemistry and Molecular Biology, Oulu Center for Cell Matrix Research and. Electronic address: taina.pihlajaniemi@oulu.fi.
Matrix Research (United States) · USOkayama University · JPUniversity of Oulu · FIUniversity of Pennsylvania · US

Funding

Biophysical Properties of Renal Glomeruli and PodocytesR01DK083592 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI JANMEY, PAUL A, MILLER, RICHARD TYLER · 2010 to 2013
$2.2M
NIDDK NIH HHS R01 DK083592
6 · The paper itself

Abstract

Collagen XVIII is characterized by three variant N termini, an interrupted collagenous domain, and a C-terminal antiangiogenic domain known as endostatin. We studied here the roles of this collagen type and its variant isoforms in the mouse kidney. Collagen XVIII appeared to be in a polarized orientation in the tubular basement membranes (BMs), the endostatin domain embedded in the BM, and the N terminus residing at the BM-fibrillar matrix interface. In the case of the glomerular BM (GBM), collagen XVIII was expressed in different isoforms depending on the side of the GBM. The orientation appeared polarized here, too, both the endothelial promoter 1-derived short variant of collagen XVIII and the epithelial promoter 2-derived longer variants having their C-terminal endostatin domains embedded in the BM and the N termini at the respective BM-cell interfaces. In addition to loosening of the proximal tubular BM structure, the Col18a1(-/-) mice showed effacement of the glomerular podocyte foot processes, and microindentation studies showed changes in the mechanical properties of the glomeruli, the Col18a1(-/-) glomeruli being ∼30% softer than the wild-type. Analysis of promoter-specific knockouts (Col18a1(P1/P1) and Col18a1(P2/P2)) indicated that tubular BM loosening is due to a lack of the shortest isoform, whereas the glomerular podocyte effacement was due to a lack of the longer isoforms. We suggest that lack of collagen XVIII may also have disparate effects on kidney function in man, but considering the mild physiological findings in the mutant mice, such effects may manifest themselves only late in life or require other compounding molecular changes.

Indexed as

AnimalsElasticityFemaleFibrillar CollagensGlomerular Basement MembraneHumansKidney Tubules, ProximalMaleMiceMice, KnockoutPodocytesProtein IsoformsProtein Structure, TertiaryFibrillar CollagensProtein Isoforms

Identifiers

PMID21193414
PMCPMC3048663
OpenAlexW2072830341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.