Evidence map›Paper›PMID 21193410›Full record

ArticleThe Journal of biological chemistry2011

Mutation of the 5'-untranslated region stem-loop structure inhibits α1(I) collagen expression in vivo.

Christopher J Parsons, Branko Stefanovic, Ekihiro Seki, Tomonori Aoyama, Anne M Latour, William F Marzluff, Richard A Rippe, David A Brenner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  3. The LARP6 La module fromRNA biology · 2025
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  6. Myofibroblast specific targeting approaches to improve fibrosis treatment.Chemical communications (Cambridge, England) · 2022
    Review
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  8. Article
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  15. Article
  16. Article
  17. Origin of myofibroblasts in the fibrotic liver in mice.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Christopher J ParsonsFrom the Departments of Biochemistry and Biophysics and.
Branko Stefanovicthe Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, Florida 32306-4300, and.
Ekihiro Sekithe Department of Medicine, University of California, San Diego, School of Medicine, La Jolla, California 92093.
Tomonori Aoyamathe Department of Medicine, University of California, San Diego, School of Medicine, La Jolla, California 92093.
Anne M LatourGenetics and.
William F MarzluffFrom the Departments of Biochemistry and Biophysics and.
Richard A Rippethe Division of Gastroenterology and Hepatology, Department of Medicine, University of North Carolina, Chapel Hill, North Carolina 27599-7080.
David A Brennerthe Department of Medicine, University of California, San Diego, School of Medicine, La Jolla, California 92093. Electronic address: dbrenner@ucsd.edu.
University of California, San Diego · USInstitute of Molecular Biology and Biophysics · RUFlorida State University · US

Funding

LPS binding to TLR4 regulates hepatic stellate cell activation and fibrosisR01DK085252 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EKIHIRO SEKI · 2011 to 2026
$4.8M
TNF ALPHA AND IMPAIRED WOUND HEALING OF CACHEXIA XIAR01GM041804 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI BRENNER, DAVID A. · 1989 to 2013
$3.4M
Synergistic Actions By Multiple Toll-Like Receptors in Alcoholic Liver DiseaseR01AA020172 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEKI, EKIHIRO · 2010 to 2014
$1.8M
Collagen Gene Expression During Ethanol-Induced FibrosisR01AA010459 · NIAAA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI RIPPE, RICHARD A · 2001 to 2005
$1.3M
PI3-K - Akt - P70S6-kinase Signaling in HSC FibrogenesisR01DK065972 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RIPPE, RICHARD A · 2004 to 2008
$1.2M
COLLAGEN GENE REGULATION DURING ETHANOL INDUCED FIBROSISR29AA010459 · NIAAA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI RIPPE, RICHARD A · 1996 to 2000
$101k
NIAAA NIH HHS AA010459NIAAA NIH HHS R01 AA010459NIAAA NIH HHS R01 AA020172NIAAA NIH HHS R29 AA010459NIDDK NIH HHS DK065972NIDDK NIH HHS R01 DK065972NIDDK NIH HHS R01 DK085252NIGMS NIH HHS GM041804NIGMS NIH HHS R01 GM041804
6 · The paper itself

Abstract

Type I collagen is a heterotrimeric extracellular matrix protein consisting of two α1(I) chains and one α2(I) chain. During liver fibrosis, activated hepatic stellate cells (HSCs) are the major source of the type I collagen that accumulates in the damaged tissue. Expression of α1(I) and α2(I) collagen mRNA is increased 60-fold compared with quiescent stellate cells and is due predominantly to post-transcriptional message regulation. Specifically, a stem-loop structure in the 5'-untranslated region of α1(I) collagen mRNA may regulate mRNA expression in activated HSCs through its interaction with stem-loop binding proteins. The stem-loop may also be necessary for efficient production and folding of the type I collagen heterotrimer. To assess the role of the stem-loop in type I collagen expression in vivo, we generated a knock-in mouse harboring a mutation that abolished the stem-loop structure. Heterozygous and homozygous knock-in mice exhibited a normal phenotype. However, steady-state levels of α1(I) collagen mRNA decreased significantly in homozygous mutant MEFs as well as HSCs; intracellular and secreted type I collagen protein levels also decreased. Homozygous mutant mice developed less liver fibrosis. These results confirm an important role of the 5' stem-loop in regulating type I collagen mRNA and protein expression and provide a mouse model for further study of collagen-associated diseases.

Indexed as

Nucleic Acid Conformation5' Untranslated RegionsAnimalsCollagen Type IGene Expression RegulationGene Knock-In TechniquesHepatic Stellate CellsHumansLiver CirrhosisMiceMice, Inbred BALB CMice, Mutant StrainsProtein BiosynthesisRNA StabilityTranscription, Genetic5' Untranslated RegionsCollagen Type I

Identifiers

PMID21193410
PMCPMC3048743
OpenAlexW2009389768

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.