Evidence map›Paper›PMID 21192634›Full record

ArticleACS chemical biology2011

Solubilization of a membrane protein by combinatorial supercharging.

Agnes Hajduczki, Sudipta Majumdar, Marie Fricke, Isola A M Brown, Gregory A Weiss

Registry-linked trialAbstract read
In one paragraph

Article in ACS chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02957370 (Electro-Phage and Colorimetric Aptamer Sensors for Clinical Staging and Monitoring of Bladder Cancer), which is not on this map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02957370 unknown statusnot on this mapstarted 2015, after this paper: background citation

Electro-Phage and Colorimetric Aptamer Sensors for Clinical Staging and Monitoring of Bladder Cancer

TypeobservationalSponsorUniversity of California, IrvineRan2015 to 2022Enrolled230ConditionsUrinary Bladder Neoplasms
3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. In vitro evolution of α-hemolysin using a liposome display.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  6. The scope of phage display for membrane proteins.Journal of molecular biology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Agnes HajduczkiDepartment of Molecular Biology and Biochemistry and ‡Department of Chemistry, University of California , Irvine, California 92697, United States.
Sudipta Majumdar
Marie Fricke
Isola A M Brown
Gregory A Weiss
University of California, Irvine · US

Funding

Engineering Soluble Aggregation-Prone and Membrane-Bound ProteinsR01GM078528 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WEISS, GREGORY A. · 2006 to 2010
$1.3M
NIGMS NIH HHS R01 GM078528
6 · The paper itself

Abstract

Hydrophobic and aggregation-prone, membrane proteins often prove too insoluble for conventional in vitro biochemical studies. To engineer soluble variants of human caveolin-1, a phage-displayed library of caveolin variants targeted the hydrophobic intramembrane domain with substitutions to charged residues. Anti-selections for insolubility removed hydrophobic variants, and positive selections for binding to the known caveolin ligand HIV gp41 isolated functional, folded variants. Assays with several caveolin binding partners demonstrated the successful folding and functionality by a solubilized, full-length caveolin variant selected from the library. This caveolin variant allowed assay of the direct interaction between caveolin and cavin. Clustered along one face of a putative helix, the solubilizing mutations suggest a structural model for the intramembrane domain of caveolin. The approach provides a potentially general method for solubilization and engineering of membrane-associated proteins by phage display.

Indexed as

Amino Acid SequenceBinding SitesCaveolin 1Cloning, MolecularEscherichia coliHIV Envelope Protein gp41HumansHydrophobic and Hydrophilic InteractionsLigandsMolecular Sequence DataMutagenesis, Site-DirectedPeptide LibraryProtein BindingProtein EngineeringProtein FoldingProtein Interaction Domains and MotifsCaveolin 1HIV Envelope Protein gp41LigandsPeptide LibraryRecombinant Proteins

Identifiers

PMID21192634
PMCPMC3078193
OpenAlexW2018624236

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.