Evidence map›Paper›PMID 21190940›Full record

ArticleThe Journal of biological chemistry2011

Solution structure of the guanine nucleotide-binding STAS domain of SLC26-related SulP protein Rv1739c from Mycobacterium tuberculosis.

Alok K Sharma, Liwen Ye, Christina E Baer, Kumaran Shanmugasundaram, Tom Alber, Seth L Alper, Alan C Rigby

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Functional regulation of the SLC26-family protein prestin by calcium/calmodulin.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  7. Deciphering the growth behaviour of Mycobacterium africanum.PLoS neglected tropical diseases · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Analysis of cellular localization and function of carboxy-terminal mutants of pendrin.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2011
    Article
  15. STAS domain structure and function.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2011
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Alok K SharmaFrom the Divison of Molecular and Vascular Medicine,; Center for Vascular Biology Research, Beth Israel Deaconess Medical Center, and; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02215 and.
Liwen YeCenter for Vascular Biology Research, Beth Israel Deaconess Medical Center, and; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02215 and; Renal Division.
Christina E Baerthe Department of Molecular and Cell Biology, University of California, Berkeley, California 94720.
Kumaran ShanmugasundaramFrom the Divison of Molecular and Vascular Medicine,; Center for Vascular Biology Research, Beth Israel Deaconess Medical Center, and; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02215 and.
Tom Alberthe Department of Molecular and Cell Biology, University of California, Berkeley, California 94720.
Seth L AlperFrom the Divison of Molecular and Vascular Medicine,; Center for Vascular Biology Research, Beth Israel Deaconess Medical Center, and; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02215 and; Renal Division,. Electronic address: salper@bidmc.harvard.edu.
Alan C RigbyFrom the Divison of Molecular and Vascular Medicine,; Center for Vascular Biology Research, Beth Israel Deaconess Medical Center, and; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02215 and. Electronic address: arigby@bidmc.harvard.edu.
Center for Vascular Biology Research · USUniversity of California, Berkeley · USHadassah Medical Center · ILHarvard University · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Scott B Snapper · 1986 to 2026
$32.4M
The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ALBER, THOMAS C · 2006 to 2010
$13.2M
MOLECULAR PHYSIOLOGY OF BAND 3 LIKE PROTEINS OF KIDNEYR37DK043495 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ALPER, SETH LEO · 1998 to 2007
$3.0M
MOLECULAR PHYSIOLOGY OF BAND 3-LIKE PROTEINS OF KIDNEYR01DK043495 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ALPER, SETH LEO · 1991 to 1997
–
NIAID NIH HHS P01 AI068135NIAID NIH HHS P01 AI68135NIDDK NIH HHS P30 DK034854NIDDK NIH HHS P30 DK34854NIDDK NIH HHS R01 DK43495NIDDK NIH HHS R37 DK043495
6 · The paper itself

Abstract

The structure and intrinsic activities of conserved STAS domains of the ubiquitous SulP/SLC26 anion transporter superfamily have until recently remained unknown. Here we report the heteronuclear, multidimensional NMR spectroscopy solution structure of the STAS domain from the SulP/SLC26 putative anion transporter Rv1739c of Mycobacterium tuberculosis. The 0.87-Å root mean square deviation structure revealed a four-stranded β-sheet with five interspersed α-helices, resembling the anti-σ factor antagonist fold. Rv1739c STAS was shown to be a guanine nucleotide-binding protein, as revealed by nucleotide-dependent quench of intrinsic STAS fluorescence and photoaffinity labeling. NMR chemical shift perturbation analysis partnered with in silico docking calculations identified solvent-exposed STAS residues involved in nucleotide binding. Rv1739c STAS was not an in vitro substrate of mycobacterial kinases or anti-σ factors. These results demonstrate that Rv1739c STAS binds guanine nucleotides at physiological concentrations and undergoes a ligand-induced conformational change but, unlike anti-σ factor antagonists, may not mediate signals via phosphorylation.

Indexed as

Computer SimulationModels, MolecularAnion Transport ProteinsBacterial ProteinsMycobacterium tuberculosisProtein Structure, SecondaryProtein Structure, TertiaryStructure-Activity RelationshipAnion Transport ProteinsBacterial Proteins

Identifiers

PMID21190940
PMCPMC3048736
OpenAlexW1991702085

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.