Evidence map›Paper›PMID 21190368›Full record

ArticleJournal of medicinal chemistry2011

Inhibition of lymphoid tyrosine phosphatase by benzofuran salicylic acids.

Torkel Vang, Yuli Xie, Wallace H Liu, Dusica Vidović, Yidong Liu, Shuangding Wu, Deborah H Smith, Alison Rinderspacher, Caty Chung, Gangli Gong and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Torkel VangInfectious and Inflammatory Disease Center, Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, California 92037, United States.
Yuli Xie
Wallace H Liu
Dusica Vidović
Yidong Liu
Shuangding Wu
Deborah H Smith
Alison Rinderspacher
Caty Chung
Gangli Gong
Tomas Mustelin
Donald W Landry
Robert C Rickert
Stephan C Schürer
Shi-Xian Deng
Lutz Tautz
Columbia University · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of Miami · US

Funding

MLSCN Center at Columbia University(RMI)U54HG003914 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ROTHMAN, JAMES E · 2005 to 2007
$9.6M
Novel Delivery Technology for Potential Drugs for Cervical CancerR21CA132121 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI TAUTZ, LUTZ · 2008 to 2009
$473k
NCI NIH HHS 1R21CA132121NCI NIH HHS R21 CA132121NHGRI NIH HHS U54 HG003914
6 · The paper itself

Abstract

The lymphoid tyrosine phosphatase (Lyp, PTPN22) is a critical negative regulator of T cell antigen receptor (TCR) signaling. A single-nucleotide polymorphism (SNP) in the ptpn22 gene correlates with the incidence of various autoimmune diseases, including type 1 diabetes, rheumatoid arthritis, and systemic lupus erythematosus. Since the disease-associated allele is a more potent inhibitor of TCR signaling, specific Lyp inhibitors may become valuable in treating autoimmunity. Using a structure-based approach, we synthesized a library of 34 compounds that inhibited Lyp with IC(50) values between 0.27 and 6.2 μM. A reporter assay was employed to screen for compounds that enhanced TCR signaling in cells, and several inhibitors displayed a dose-dependent, activating effect. Subsequent probing for Lyp's direct physiological targets by immunoblot analysis confirmed the ability of the compounds to inhibit Lyp in T cells. Selectivity profiling against closely related tyrosine phosphatases and in silico docking studies with the crystal structure of Lyp yielded valuable information for the design of Lyp-specific compounds.

Indexed as

BenzofuransHumansJurkat CellsModels, MolecularNFATC Transcription FactorsProtein Tyrosine Phosphatase, Non-Receptor Type 22Receptors, Antigen, T-CellRecombinant ProteinsSalicylatesSmall Molecule LibrariesStructure-Activity RelationshipT-LymphocytesTranscription Factor AP-1BenzofuransNFATC Transcription FactorsProtein Tyrosine Phosphatase, Non-Receptor Type 22Receptors, Antigen, T-CellRecombinant ProteinsSalicylatesSmall Molecule LibrariesTranscription Factor AP-1

Identifiers

PMID21190368
PMCPMC3025750
OpenAlexW2082518460

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.