Evidence map›Paper›PMID 21189285›Full record

ArticleMolecular and cellular biology2011

Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis.

Francis S Wolenski, Michael R Garbati, Tristan J Lubinski, Nikki Traylor-Knowles, Erica Dresselhaus, Derek J Stefanik, Haley Goucher, John R Finnerty, Thomas D Gilmore

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 72 citations in OpenAlex.

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  11. The cyclic dinucleotide 2'3'-cGAMP induces a broad antibacterial and antiviral response in the sea anemoneProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
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  14. Looking Down on NF-κB.Molecular and cellular biology · 2020
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Francis S WolenskiDepartment of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA.
Michael R Garbati
Tristan J Lubinski
Nikki Traylor-Knowles
Erica Dresselhaus
Derek J Stefanik
Haley Goucher
John R Finnerty
Thomas D Gilmore
Boston University · US

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HAHN, MARK E · 1995 to 2019
$46.1M
TRANSFORMATION OF CELLS BY THE V-REL ONCOGENER01CA047763 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GILMORE, THOMAS DAVID · 1993 to 2009
$2.7M
TRANSFORMATION OF CELLS BY THE V-REL ONCOGENER29CA047763 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GILMORE, THOMAS DAVID · 1988 to 1992
–
NCI NIH HHS CA047763NCI NIH HHS CA047763-21S3NCI NIH HHS R01 CA047763NIEHS NIH HHS 5 P42 ES7381NIEHS NIH HHS P42 ES007381
6 · The paper itself

Abstract

The sea anemone Nematostella vectensis is the leading developmental and genomic model for the phylum Cnidaria, which includes anemones, hydras, jellyfish, and corals. In insects and vertebrates, the NF-κB pathway is required for cellular and organismal responses to various stresses, including pathogens and chemicals, as well as for several developmental processes. Herein, we have characterized proteins that comprise the core NF-κB pathway in Nematostella, including homologs of NF-κB, IκB, Bcl-3, and IκB kinase (IKK). We show that N. vectensis NF-κB (Nv-NF-κB) can bind to κB sites and activate transcription of reporter genes containing multimeric κB sites or the Nv-IκB promoter. Both Nv-IκB and Nv-Bcl-3 interact with Nv-NF-κB and block its ability to activate reporter gene expression. Nv-IKK is most similar to human IKKε/TBK kinases and, in vitro, can phosphorylate Ser47 of Nv-IκB. Nv-NF-κB is expressed in a subset of ectodermal cells in juvenile and adult Nematostella anemones. A bioinformatic analysis suggests that homologs of many mammalian NF-κB target genes are targets for Nv-NF-κB, including genes involved in apoptosis and responses to organic compounds and endogenous stimuli. These results indicate that NF-κB pathway proteins in Nematostella are similar to their vertebrate homologs, and these results also provide a framework for understanding the evolutionary origins of NF-κB signaling.

Indexed as

AnimalsB-Cell Lymphoma 3 ProteinCell LineComputational BiologyEvolution, MolecularHumansI-kappa B KinaseI-kappa B ProteinsNF-kappa BPhylogenyProto-Oncogene ProteinsSea AnemonesSignal TransductionTranscription FactorsB-Cell Lymphoma 3 ProteinBCL3 protein, humanI-kappa B KinaseI-kappa B ProteinsNF-kappa BProto-Oncogene ProteinsTranscription Factors

Identifiers

PMID21189285
PMCPMC3067825
OpenAlexW2167435825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.