Evidence map›Paper›PMID 21189019›Full record

ArticleJournal of medicinal chemistry2011

Identifying chelators for metalloprotein inhibitors using a fragment-based approach.

Jennifer A Jacobsen, Jessica L Fullagar, Melissa T Miller, Seth M Cohen

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 129 citations in OpenAlex.

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  15. Chemical communications (Cambridge, England) · 2021
    Article
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  20. Dentin degradonomics - The potential role of salivary MMP-8 in dentin caries.Journal of clinical and experimental dentistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jennifer A JacobsenDepartment of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0358, United States.
Jessica L Fullagar
Melissa T Miller
Seth M Cohen
University of California, San Diego · US

Funding

Insight and Optimization of Metalloprotein InhibitorsR01GM098435 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI THEODORAKIS, EMMANUEL A · 2011 to 2018
$2.2M
Translational Development of Novel MMP InhibitorsR01HL080049 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COHEN, SETH M · 2006 to 2010
$1.9M
New Strategies and Screening Methods for Metalloproteinase InhibitionR21HL094571 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COHEN, SETH M · 2009 to 2010
$373k
NHLBI NIH HHS R01 HL080049NHLBI NIH HHS R21 HL094571NIGMS NIH HHS R01 GM098435
6 · The paper itself

Abstract

Fragment-based lead design (FBLD) has been used to identify new metal-binding groups for metalloenzyme inhibitors. When screened at 1 mM, a chelator fragment library (CFL-1.1) of 96 compounds produced hit rates ranging from 29% to 43% for five matrix metalloproteases (MMPs), 24% for anthrax lethal factor (LF), 49% for 5-lipoxygenase (5-LO), and 60% for tyrosinase (TY). The ligand efficiencies (LE) of the fragment hits are excellent, in the range of 0.4-0.8 kcal/mol. The MMP enzymes all generally elicit the same chelators as hits from CFL-1.1; however, the chelator fragments that inhibit structurally unrelated metalloenzymes (LF, 5-LO, TY) vary considerably. To develop more advanced hits, one hit from CFL-1.1, 8-hydroxyquinoline, was elaborated at four different positions around the ring system to generate new fragments. 8-Hydroxyquinoline fragments substituted at either the 5- or 7-positions gave potent hits against MMP-2, with IC(50) values in the low micromolar range. The 8-hydroxyquinoline represents a promising new chelator scaffold for the development of MMP inhibitors that was discovered by use of a metalloprotein-focused chelator fragment library.

Indexed as

Matrix Metalloproteinase InhibitorsAntigens, BacterialBacterial ToxinsChelating AgentsCopperDrug DesignHumansHydroxyquinolinesIronLigandsLipoxygenase InhibitorsMatrix MetalloproteinasesMonophenol MonooxygenaseNitric Oxide Synthase Type IIRecombinant ProteinsSmall Molecule Librariesanthrax toxinAntigens, BacterialBacterial ToxinsChelating AgentsCopperHydroxyquinolinesIronLigandsLipoxygenase InhibitorsMatrix Metalloproteinase InhibitorsMatrix MetalloproteinasesMonophenol MonooxygenaseNitric Oxide Synthase Type IIRecombinant ProteinsSmall Molecule LibrariesSulfonamidesZinc

Identifiers

PMID21189019
PMCPMC3024453
OpenAlexW2050475024

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.