Evidence map›Paper›PMID 21188797›Full record

ArticleNature structural & molecular biology2007

A regulator of Dscam mutually exclusive splicing fidelity.

Sara Olson, Marco Blanchette, Jung Park, Yiannis Savva, Gene W Yeo, Joanne M Yeakley, Donald C Rio, Brenton R Graveley

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. RNA secondary structures inRNA (New York, N.Y.) · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Revisiting Dscam diversity: lessons from clustered protocadherins.Cellular and molecular life sciences : CMLS · 2019
    Review
  13. Article
  14. Article
  15. The determinants of alternative RNA splicing in human cells.Molecular genetics and genomics : MGG · 2017
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sara OlsonDepartment of Genetics and Developmental Biology, University of Connecticut Health Center, 263 Farmington Avenue, Farmington, Connecticut 06030-3301, USA.
Marco Blanchette
Jung Park
Yiannis Savva
Gene W Yeo
Joanne M Yeakley
Donald C Rio
Brenton R Graveley

Funding

Alternative Splicing of the Drosophilia Dscam Pre-mRNAR01GM067842 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2003 to 2014
$3.6M
BIOCHEMISTRY OF REGULATED PRE-MRNA SPLICING/DROSOPHILAR01GM061987 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2000 to 2010
$3.0M
The Mechanisms and Regulatory Networks of Alternative Splicing in DrosophilaR01GM062516 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2001 to 2009
$2.6M
NIGMS NIH HHS GM61987NIGMS NIH HHS GM62561NIGMS NIH HHS GM67842NIGMS NIH HHS R01 GM061987NIGMS NIH HHS R01 GM062516NIGMS NIH HHS R01 GM067842
6 · The paper itself

Abstract

The Down syndrome cell adhesion molecule (Dscam) gene has essential roles in neural wiring and pathogen recognition in Drosophila melanogaster. Dscam encodes 38,016 distinct isoforms via extensive alternative splicing. The 95 alternative exons in Dscam are organized into clusters that are spliced in a mutually exclusive manner. The exon 6 cluster contains 48 variable exons and uses a complex system of competing RNA structures to ensure that only one variable exon is included. Here we show that the heterogeneous nuclear ribonucleoprotein hrp36 acts specifically within, and throughout, the exon 6 cluster to prevent the inclusion of multiple exons. Moreover, hrp36 prevents serine/arginine-rich proteins from promoting the ectopic inclusion of multiple exon 6 variants. Thus, the fidelity of mutually exclusive splicing in the exon 6 cluster is governed by an intricate combination of alternative RNA structures and a globally acting splicing repressor.

Indexed as

AnimalsCell Adhesion MoleculesDrosophila melanogasterDrosophila ProteinsExonsGene Expression RegulationHeterogeneous-Nuclear RibonucleoproteinsHumansNuclear ProteinsProtein Array AnalysisReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA Splice SitesCell Adhesion MoleculesDrosophila ProteinsDscam1 protein, DrosophilaHeterogeneous-Nuclear RibonucleoproteinsHrb87F protein, DrosophilaNuclear ProteinsRNA, MessengerRNA Splice Sites

Identifiers

PMID21188797
PMCPMC3050534

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.