Evidence map›Paper›PMID 21187912›Full record

ArticlePLoS pathogens2010

The killing of African trypanosomes by ethidium bromide.

Arnab Roy Chowdhury, Rahul Bakshi, Jianyang Wang, Gokben Yildirir, Beiyu Liu, Valeria Pappas-Brown, Gökhan Tolun, Jack D Griffith, Theresa A Shapiro, Robert E Jensen and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 84 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Why Euglenozoans.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Article
  6. Cytological profiling of trypanocidal principles fromPhytomedicine plus : international journal of phytotherapy and phytopharmacology · 2025
    Article
  7. Article
  8. Drug resistance in animal trypanosomiases: Epidemiology, mechanisms and control strategies.International journal for parasitology. Drugs and drug resistance · 2024
    Review
  9. Article
  10. Review
  11. Curvicollide D Isolated from the FungusInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Modulation of DNA structure formation using small molecules.Biochimica et biophysica acta. Molecular cell research · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Arnab Roy ChowdhuryDepartment of Biological Chemistry, Johns Hopkins Medical School, Baltimore, Maryland, United States of America.
Rahul Bakshi
Jianyang Wang
Gokben Yildirir
Beiyu Liu
Valeria Pappas-Brown
Gökhan Tolun
Jack D Griffith
Theresa A Shapiro
Robert E Jensen
Paul T Englund
Johns Hopkins University · USDuke University · USUNC Lineberger Comprehensive Cancer CenterUniversity of North Carolina at Chapel Hill · US

Funding

STRUCTURE AND SYNTHESIS OF DNAR01AI058613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI JENSEN, ROBERT E · 2004 to 2013
$7.4M
HOMOLOOUS RECOMBINATION: ITS MOLECULAR CYTOLOGYR01GM031819 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRIFFITH, JACK D · 1985 to 2017
$5.2M
Nucleoprotein structures formed at sites of DNA damageR01ES013773 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRIFFITH, JACK D · 2005 to 2015
$3.2M
MITOCHONDRIAL DYNAMICS-MORPHOLOGY/DIVISION/SEGREGATIONR01GM054021 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI JENSEN, ROBERT E · 1996 to 2008
$2.7M
TOPOISOMERASES--TARGET FOR ANTITRYPANOSOMAL THERAPYR01AI028855 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SHAPIRO, THERESA A · 1990 to 2006
$2.5M
Topoisomerases: Target for Antitrypanosomal TherapyR56AI028855 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SHAPIRO, THERESA A · 2009 to 2009
$410k
NIAID NIH HHS AI028855NIAID NIH HHS AI058613NIAID NIH HHS R01 AI028855NIAID NIH HHS R01 AI058613NIAID NIH HHS R56 AI028855NIEHS NIH HHS R01 ES013773NIGMS NIH HHS GM054021NIGMS NIH HHS GM31819NIGMS NIH HHS R01 GM031819NIGMS NIH HHS R01 GM054021
6 · The paper itself

Abstract

Introduced in the 1950s, ethidium bromide (EB) is still used as an anti-trypanosomal drug for African cattle although its mechanism of killing has been unclear and controversial. EB has long been known to cause loss of the mitochondrial genome, named kinetoplast DNA (kDNA), a giant network of interlocked minicircles and maxicircles. However, the existence of viable parasites lacking kDNA (dyskinetoplastic) led many to think that kDNA loss could not be the mechanism of killing. When recent studies indicated that kDNA is indeed essential in bloodstream trypanosomes and that dyskinetoplastic cells survive only if they have a compensating mutation in the nuclear genome, we investigated the effect of EB on kDNA and its replication. We here report some remarkable effects of EB. Using EM and other techniques, we found that binding of EB to network minicircles is low, probably because of their association with proteins that prevent helix unwinding. In contrast, covalently-closed minicircles that had been released from the network for replication bind EB extensively, causing them, after isolation, to become highly supertwisted and to develop regions of left-handed Z-DNA (without EB, these circles are fully relaxed). In vivo, EB causes helix distortion of free minicircles, preventing replication initiation and resulting in kDNA loss and cell death. Unexpectedly, EB also kills dyskinetoplastic trypanosomes, lacking kDNA, by inhibiting nuclear replication. Since the effect on kDNA occurs at a >10-fold lower EB concentration than that on nuclear DNA, we conclude that minicircle replication initiation is likely EB's most vulnerable target, but the effect on nuclear replication may also contribute to cell killing.

Indexed as

Antiprotozoal AgentsDNA, KinetoplastDNA ReplicationDNA, Z-FormEthidiumGenome, MitochondrialNucleic Acid ConformationTrypanosomaTrypanosoma brucei bruceiTrypanosomiasis, AfricanAntiprotozoal AgentsDNA, KinetoplastDNA, Z-FormEthidium

Identifiers

PMID21187912
PMCPMC3002999
OpenAlexW1990569526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.