Evidence map›Paper›PMID 21187436›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways.

David F Choy, Barmak Modrek, Alexander R Abbas, Sarah Kummerfeld, Hilary F Clark, Lawren C Wu, Grazyna Fedorowicz, Zora Modrusan, John V Fahy, Prescott G Woodruff and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 164 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Trial
  7. The effects of lebrikizumab in patients with mild asthma following whole lung allergen challenge.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2014
    Trial
  8. Trial
  9. Article
  10. Article
  11. Article
  12. Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort.The journal of allergy and clinical immunology. Global · 2025
    Article
  13. Frequent exacerbator-a novel endotype of pediatric asthma.The Journal of allergy and clinical immunology · 2025
    Review
  14. Article
  15. CD4Frontiers in immunology · 2025
    Review
  16. Article
  17. Omics approaches in asthma research: Challenges and opportunities.Chinese medical journal pulmonary and critical care medicine · 2024
    Review
  18. Article
  19. Article
  20. Identification of candidate aberrant differentially methylated/expressed genes in asthma.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2022
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

David F ChoyImmunology, Tissue Growth, and Repair Biomarker Discovery, Genentech, South San Francisco, CA 94080, USA.
Barmak Modrek
Alexander R Abbas
Sarah Kummerfeld
Hilary F Clark
Lawren C Wu
Grazyna Fedorowicz
Zora Modrusan
John V Fahy
Prescott G Woodruff
Joseph R Arron
Bioinformatics Institute · SGGene Therapy Laboratory · FRCooperative Research Centre for Tissue Growth and Repair · AUUniversity of California, San Francisco · US

Funding

ROLE OF SELECTINS IN LEUKOCYTE RECRUITMENT TO INFLAMED AIRWAYS IN ASTHMAP50HL056385 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI LOCKSLEY, RICHARD M · 1996 to 2005
$10.5M
Protein carbohydrate interactions in the pathophysiology of asthma exacerbationsR01HL080414 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI John V Fahy · 2005 to 2026
$9.2M
Molecular Phenotyping of AsthmaR01HL095372 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WOODRUFF, PRESCOTT G · 2008 to 2011
$3.1M
T CELL INFLAMMATION AND MUCIN HYPERSECRETION IN COPDR01HL066564 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FAHY, JOHN V · 2001 to 2004
$1.3M
MECHANISMS OF SMOOTH MUSCLE HYPERREACTIVITY ON ASTHMAK23RR017002 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WOODRUFF, PRESCOTT G · 2002 to 2006
$744k
ROLE OF SELECTINS IN LEUKOCYTE RECRUITMENT TO INFLAMED AIRWAYS IN ASTHMAP01HL056385 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI CAUGHEY, GEORGE · 1996 to 1996
–
GENE MANIPULATION IN ACUTE LUNG INJURY FROM SMOKEF32HL009572 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI QUINN, DEBORAH A · 1996 to 1998
–
NCRR NIH HHS K23 RR017002NCRR NIH HHS RR17002NHLBI NIH HHS F32 HL009572NHLBI NIH HHS HL080414NHLBI NIH HHS HL09572NHLBI NIH HHS HL56385NHLBI NIH HHS HL66564NHLBI NIH HHS P50 HL056385NHLBI NIH HHS R01 HL066564NHLBI NIH HHS R01 HL080414NHLBI NIH HHS R01 HL095372
6 · The paper itself

Abstract

Asthma is canonically thought of as a disorder of excessive Th2-driven inflammation in the airway, although recent studies have described heterogeneity with respect to asthma pathophysiology. We have previously described distinct phenotypes of asthma based on the presence or absence of a three-gene "Th2 signature" in bronchial epithelium, which differ in terms of eosinophilic inflammation, mucin composition, subepithelial fibrosis, and corticosteroid responsiveness. In the present analysis, we sought to describe Th2 inflammation in human asthmatic airways quantitatively with respect to known mediators of inflammation and intercellular communication. Using whole-genome microarray and quantitative real-time PCR analysis of endobronchial biopsies from 27 mild-to-moderate asthmatics and 13 healthy controls with associated clinical and demographic data, we found that asthmatic Th2 inflammation is expressed over a variable continuum, correlating significantly with local and systemic measures of allergy and eosinophilia. We evaluated a composite metric describing 79 coexpressed genes associated with Th2 inflammation against the biological space comprising cytokines, chemokines, and growth factors, identifying distinctive patterns of inflammatory mediators as well as Wnt, TGF-β, and platelet-derived growth factor family members. This integrated description of the factors regulating inflammation, cell migration, and tissue remodeling in asthmatic airways has important consequences for the pathophysiological and clinical impacts of emerging asthma therapeutics targeting Th2 inflammation.

Indexed as

AdultAsthmaBiopsyBronchiCell CommunicationFemaleGene Expression RegulationHumansHypersensitivityImmunophenotypingInflammationInflammation MediatorsMaleMiddle AgedOligonucleotide Array Sequence AnalysisRespiratory MucosaInflammation Mediators

Identifiers

PMID21187436
PMCPMC3981556
OpenAlexW1843986322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.