Evidence map›Paper›PMID 21187419›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Hexagonal assembly of a restricting TRIM5alpha protein.

Barbie K Ganser-Pornillos, Viswanathan Chandrasekaran, Owen Pornillos, Joseph G Sodroski, Wesley I Sundquist, Mark Yeager

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 184 papers.

0numbers the graph read from it
0cells of the map it votes in
184citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

184 citing papers in PubMed, 249 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A trove of antiviral TRIM family E3 ligases in reptiles.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Cyclophilin A Regulates Tripartite Motif 5 Alpha Restriction of HIV-1.International journal of molecular sciences · 2025
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Capsid-host interactions for HIV-1 ingress.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  17. Cryo-electron tomography to study viral infection.Biochemical Society transactions · 2023
    Review
  18. Article
  19. Article
  20. Regulation of Epstein-Barr Virus Minor Capsid Protein BORF1 by TRIM5α.International journal of molecular sciences · 2022
    Article

124 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Barbie K Ganser-PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
Viswanathan Chandrasekaran
Owen Pornillos
Joseph G Sodroski
Wesley I Sundquist
Mark Yeager
Scripps Research Institute · USUniversity of Utah · USHarvard University · USUniversity of Virginia · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI HOPE, THOMAS · 2007 to 2018
$51.1M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Structure Analysis of Viral Assembly MechanismsR01GM066087 · NIGMS · UNIVERSITY OF VIRGINIA · PI YEAGER, MARK JAY · 2003 to 2014
$4.4M
Antiretroviral Activity of TRIM5alphaR01AI063987 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 2005 to 2014
$4.2M
Structure and Assembly of the HIV-1 CoreR37AI045405 · NIAID · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2004 to 2013
$2.9M
Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
300 keV Liquid Helium Robotic MicroscopeS10RR025067 · NCRR · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H. · 2009 to 2009
$2.0M
NCRR NIH HHS 1G20RR031199NCRR NIH HHS 1S10RR025067NCRR NIH HHS G20 RR031199NCRR NIH HHS P41 RR017573NCRR NIH HHS P41 RR17573NCRR NIH HHS S10 RR025067NIAID NIH HHS R01 AI063987NIAID NIH HHS R01-AI63987NIAID NIH HHS R37 AI045405NIAID NIH HHS R37 AI-45405-06NIGMS NIH HHS P50 GM082545NIGMS NIH HHS P50-GM082545NIGMS NIH HHS R01 GM066087NIGMS NIH HHS R01-GM066087
6 · The paper itself

Abstract

TRIM5α proteins are restriction factors that protect mammalian cells from retroviral infections by binding incoming viral capsids, accelerating their dissociation, and preventing reverse transcription of the viral genome. Individual TRIM5 isoforms can often protect cells against a broad range of retroviruses, as exemplified by rhesus monkey TRIM5α and its variant, TRIM5-21R, which recognize HIV-1 as well as several distantly related retroviruses. Although capsid recognition is not yet fully understood, previous work has shown that the C-terminal SPRY/B30.2 domain of dimeric TRIM5α binds directly to viral capsids, and that higher-order TRIM5α oligomerization appears to contribute to the efficiency of capsid recognition. Here, we report that recombinant TRIM5-21R spontaneously assembled into two-dimensional paracrystalline hexagonal lattices comprising open, six-sided rings. TRIM5-21R assembly did not require the C-terminal SPRY domain, but did require both protein dimerization and a B-box 2 residue (Arg121) previously implicated in TRIM5α restriction and higher-order assembly. Furthermore, TRIM5-21R assembly was promoted by binding to hexagonal arrays of the HIV-1 CA protein that mimic the surface of the viral capsid. We therefore propose that TRIM5α proteins have evolved to restrict a range of different retroviruses by assembling a deformable hexagonal scaffold that positions the capsid-binding domains to match the symmetry and spacing of the capsid surface lattice. Capsid recognition therefore involves a synergistic combination of direct binding interactions, avidity effects, templated assembly, and lattice complementarity.

Indexed as

AnimalsAntiviral Restriction FactorsCapsidCarrier ProteinsCross-Linking ReagentsCryoelectron MicroscopyCrystallography, X-RayDimerizationHIV-1HumansImage Processing, Computer-AssistedMacaca mulattaProtein ConformationProtein Structure, TertiaryRecombinant ProteinsRetroviridaeAntiviral Restriction FactorsCarrier ProteinsCross-Linking ReagentsRecombinant ProteinsTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID21187419
PMCPMC3021009
OpenAlexW2148372587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.