Evidence map›Paper›PMID 21186350›Full record

ArticleNature genetics2011

Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes.

GoDARTS and UKPDS Diabetes Pharmacogenetics Study Group, Wellcome Trust Case Control Consortium 2, Kaixin Zhou, Celine Bellenguez, Chris C A Spencer, Amanda J Bennett, Ruth L Coleman, Roger Tavendale, Simon A Hawley, Louise A Donnelly and 43 more

2 registry-linked trialsOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 227 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
227citing papers in PubMed, 7 pooled it
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02733679 phase4completednot on this mapstarted 2016, after this paper: background citation

Response of Individuals With Ataxia-Telangiectasia to Metformin and Pioglitazone

TypeinterventionalSponsorNHS TaysideRan2016 to 2017Enrolled27ConditionsAtaxia-TelangiectasiaArmsMetformin, Pioglitazone
NCT02783469 completednot on this map

Genetics of Diabetes Audit and Research in Tayside Scotland (DOLORisk Dundee)

TypeobservationalSponsorUniversity of DundeeRan2004 to 2009Enrolled1,915ConditionsDiabetic Neuropathic PainArmsIdentification of genetic causes of diabetic neuropathic pain
3 · Its place in the literature

Who cites it

227 citing papers in PubMed, 7 syntheses or guidelines pooled it, 428 citations in OpenAlex.

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  10. Genetic Variants inDiabetes · 2018
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167 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

53 authors.

GoDARTS and UKPDS Diabetes Pharmacogenetics Study GroupBiomedical Research Institute, University of Dundee, Dundee, UK.
Wellcome Trust Case Control Consortium 2
Kaixin Zhou
Celine Bellenguez
Chris C A Spencer
Amanda J Bennett
Ruth L Coleman
Roger Tavendale
Simon A Hawley
Louise A Donnelly
Chris Schofield
Christopher J Groves
Lindsay Burch
Fiona Carr
Amy Strange
Colin Freeman
Jenefer M Blackwell
Elvira Bramon
Matthew A Brown
Juan P Casas
Aiden Corvin
Nicholas Craddock
Panos Deloukas
Serge Dronov
Audrey Duncanson
Sarah Edkins
Emma Gray
Sarah Hunt
Janusz Jankowski
Cordelia Langford
Hugh S Markus
Christopher G Mathew
Robert Plomin
Anna Rautanen
Stephen J Sawcer
Nilesh J Samani
Richard Trembath
Ananth C Viswanathan
Nicholas W Wood
MAGIC investigators
Lorna W Harries
Andrew T Hattersley
Alex S F Doney
Helen Colhoun
Andrew D Morris
Calum Sutherland
D Grahame Hardie
Leena Peltonen
Mark I McCarthy
Rury R Holman
Colin N A Palmer
Peter Donnelly
Ewan R Pearson

Funding

Chief Scientist OfficeDepartment of Health PDA/02/06/016Medical Research Council G0601261Medical Research Council G0901310Medical Research Council G19/2Wellcome Trust 084726Wellcome Trust 084726/Z/08/ZWellcome Trust 085475/B/08/ZWellcome Trust 085475/Z/08/Z
6 · The paper itself

Abstract

Metformin is the most commonly used pharmacological therapy for type 2 diabetes. We report a genome-wide association study for glycemic response to metformin in 1,024 Scottish individuals with type 2 diabetes with replication in two cohorts including 1,783 Scottish individuals and 1,113 individuals from the UK Prospective Diabetes Study. In a combined meta-analysis, we identified a SNP, rs11212617, associated with treatment success (n = 3,920, P = 2.9 × 10(-9), odds ratio = 1.35, 95% CI 1.22-1.49) at a locus containing ATM, the ataxia telangiectasia mutated gene. In a rat hepatoma cell line, inhibition of ATM with KU-55933 attenuated the phosphorylation and activation of AMP-activated protein kinase in response to metformin. We conclude that ATM, a gene known to be involved in DNA repair and cell cycle control, plays a role in the effect of metformin upstream of AMP-activated protein kinase, and variation in this gene alters glycemic response to metformin.

Indexed as

AnimalsAtaxia Telangiectasia Mutated ProteinsCarcinoma, HepatocellularCell Cycle ProteinsDiabetes Mellitus, Type 2DNA-Binding ProteinsDose-Response Relationship, DrugGenome-Wide Association StudyHumansHypoglycemic AgentsLiver NeoplasmsMetforminPolymorphism, Single NucleotideProtein KinasesProtein Serine-Threonine KinasesRatsAtaxia Telangiectasia Mutated ProteinsATM protein, humanCell Cycle ProteinsDNA-Binding ProteinsHypoglycemic AgentsMetforminProtein KinasesProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID21186350
PMCPMC3030919
OpenAlexW2162897961

What OpenQuestion holds

Texttitle and abstract
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.