ArticlePlant & cell physiology2011
RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.
Article in Plant & cell physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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32 citing papers in PubMed.
- Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025Review
- Identification of stably expressed reference genes for expression studies inFrontiers in plant science · 2022Article
- Transformation ofPlant biotechnology (Tokyo, Japan) · 2021Article
- Construction of a Full-Length cDNA Over-Expressing Library to Identify Valuable Genes fromInternational journal of molecular sciences · 2021Article
- Fox Hunting in Wild Apples: Searching for Novel Genes inInternational journal of molecular sciences · 2020Article
- Insertional Mutagenesis Approaches and Their Use in Rice for Functional Genomics.Plants (Basel, Switzerland) · 2019Review
- Infrastructures of systems biology that facilitate functional genomic study in rice.Rice (New York, N.Y.) · 2019Review
- Mutagenesis in Rice: The Basis for Breeding a New Super Plant.Frontiers in plant science · 2019Review
- Functional Identification of Salt-Stress-Related Genes Using the FOX Hunting System fromInternational journal of molecular sciences · 2018Article
- Development of iFOX-hunting as a functional genomic tool and demonstration of its use to identify early senescence-related genes in the polyploid Brassica napus.Plant biotechnology journal · 2018Article
- Whole Genome Characterization of a Few EMS-Induced Mutants of Upland Rice Variety Nagina 22 Reveals a Staggeringly High Frequency of SNPs Which Show High Phenotypic Plasticity Towards the Wild-Type.Frontiers in plant science · 2018Article
- Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.Frontiers in plant science · 2018Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.Plant molecular biology · 2016Article
- Functional Identification and Characterization of Genes Cloned from Halophyte Seashore Paspalum Conferring Salinity and Cadmium Tolerance.Frontiers in plant science · 2016Article
- Generation of Wheat Transcription Factor FOX Rice Lines and Systematic Screening for Salt and Osmotic Stress Tolerance.PloS one · 2015Article
- Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.Plant & cell physiology · 2015Article
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- Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.Plant & cell physiology · 2014Article
- RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary.Plant & cell physiology · 2014Article
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Authors and funding
23 authors.
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Abstract
Identification of gene function is important not only for basic research but also for applied science, especially with regard to improvements in crop production. For rapid and efficient elucidation of useful traits, we developed a system named FOX hunting (Full-length cDNA Over-eXpressor gene hunting) using full-length cDNAs (fl-cDNAs). A heterologous expression approach provides a solution for the high-throughput characterization of gene functions in agricultural plant species. Since fl-cDNAs contain all the information of functional mRNAs and proteins, we introduced rice fl-cDNAs into Arabidopsis plants for systematic gain-of-function mutation. We generated >30,000 independent Arabidopsis transgenic lines expressing rice fl-cDNAs (rice FOX Arabidopsis mutant lines). These rice FOX Arabidopsis lines were screened systematically for various criteria such as morphology, photosynthesis, UV resistance, element composition, plant hormone profile, metabolite profile/fingerprinting, bacterial resistance, and heat and salt tolerance. The information obtained from these screenings was compiled into a database named 'RiceFOX'. This database contains around 18,000 records of rice FOX Arabidopsis lines and allows users to search against all the observed results, ranging from morphological to invisible traits. The number of searchable items is approximately 100; moreover, the rice FOX Arabidopsis lines can be searched by rice and Arabidopsis gene/protein identifiers, sequence similarity to the introduced rice fl-cDNA and traits. The RiceFOX database is available at http://ricefox.psc.riken.jp/.
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