Evidence map›Paper›PMID 21185315›Full record

ArticleNeuropharmacology2011

A systems genetic analysis of alcohol drinking by mice, rats and men: influence of brain GABAergic transmission.

Laura M Saba, Beth Bennett, Paula L Hoffman, Kelsey Barcomb, Takao Ishii, Katerina Kechris, Boris Tabakoff

Abstract read
In one paragraph

Article in Neuropharmacology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Systems genetics of sensation seeking.Genes, brain, and behavior · 2019
    Article
  6. Article
  7. Article
  8. Genome characterization of the selected long- and short-sleep mouse lines.Mammalian genome : official journal of the International Mammalian Genome Society · 2016
    Article
  9. Review
  10. Genes and Alcohol Consumption: Studies with Mutant Mice.International review of neurobiology · 2016
    Review
  11. Article
  12. Influence of sex on genetic regulation of "drinking in the dark" alcohol consumption.Mammalian genome : official journal of the International Mammalian Genome Society · 2015
    Article
  13. Article
  14. Article
  15. Article
  16. Genetics and genomics of alcohol sensitivity.Molecular genetics and genomics : MGG · 2014
    Review
  17. Article
  18. Article
  19. Article
  20. Introduction to sequencing the brain transcriptome.International review of neurobiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Laura M SabaDepartment of Pharmacology, University of Colorado Denver School of Medicine, PO Box 6511, Mail Stop 8303, Aurora, CO 80045, USA.
Beth Bennett
Paula L Hoffman
Kelsey Barcomb
Takao Ishii
Katerina Kechris
Boris Tabakoff
University of Colorado Denver · USColorado School of Public Health · US

Funding

The Heritable Transcriptome and AlcoholismR24AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, SABA, LAURA MAREN · 2001 to 2021
$14.2M
Regulation of alcohol consumption by chromatin modificationU01AA016649 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, TABAKOFF, BORIS · 2006 to 2013
$2.4M
Colorado Gene Array CoreU01AA016663 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI TABAKOFF, BORIS · 2006 to 2010
$2.2M
Genomic regulatory sequence analysis for alcohol-related phenotypesK01AA016922 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI KECHRIS-MAYS, KATHERINA · 2007 to 2011
$737k
Alcohol-induced dysregulation of thiol homeostasis and endothelial functionR21AA026922 · NIAAA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HAN, JINGYAN, ZANG, MENGWEI · 2019 to 2020
$439k
NIAAA NIH HHS K01 AA016922NIAAA NIH HHS K01AA 026922NIAAA NIH HHS R21 AA026922NIAAA NIH HHS R24 AA013162NIAAA NIH HHS R24AA013162NIAAA NIH HHS U01 AA016649NIAAA NIH HHS U01 AA016663NIAAA NIH HHS U01AA016663NIAAA NIH HHS U01AA16649
6 · The paper itself

Abstract

Genetic influences on the predisposition to complex behavioral or physiological traits can reflect genetic polymorphisms that lead to altered gene product function, and/or variations in gene expression levels. We have explored quantitative variations in an animal's alcohol consumption, using a genetical genomic/phenomic approach. In our studies, gene expression is correlated with amount of alcohol consumed, and genomic regions that regulate the alcohol consumption behavior and the quantitative levels of gene expression (behavioral and expression quantitative trait loci [QTL]) are determined and used as a filter to identify candidate genes predisposing the behavior. We determined QTLs for alcohol consumption using the LXS panel of recombinant inbred mice. We then identified genes that were: 1) differentially expressed between five high and five low alcohol-consuming lines or strains of mice; and 2) were physically located in, or had an expression QTL (eQTL) within the alcohol consumption QTLs. Comparison of mRNA and protein levels in brains of high and low alcohol consuming mice led us to a bioinformatic examination of potential regulation by microRNAs of an identified candidate transcript, Gnb1 (G protein beta subunit 1). We combined our current analysis with our earlier work identifying candidate genes for the alcohol consumption trait in mice, rats and humans. Our overall analysis leads us to postulate that the activity of the GABAergic system, and in particular GABA release and GABA receptor trafficking and signaling, which involves G protein function, contributes significantly to genetic variation in the predisposition to varying levels of alcohol consumption. This article is part of a Special Issue entitled 'Trends in neuropharmacology: in memory of Erminio Costa'.

Indexed as

Alcohol DrinkingAnimalsBrainCentral Nervous System DepressantsEthanolgamma-Aminobutyric AcidGene ExpressionGenetic Predisposition to DiseaseGenetic VariationGTP-Binding Protein beta SubunitsHumansMaleMiceMice, Inbred C57BLMicroRNAsPhenotypeCentral Nervous System DepressantsEthanolgamma-Aminobutyric AcidGNB1 protein, humanGTP-Binding Protein beta SubunitsMicroRNAsReceptors, GABA

Identifiers

PMID21185315
PMCPMC3079014
OpenAlexW2107633790

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.