Evidence map›Paper›PMID 21185306›Full record

ArticleJournal of molecular biology2011

Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli.

Tae Seok Moon, Elizabeth J Clarke, Eli S Groban, Alvin Tamsir, Ryan M Clark, Matthew Eames, Tanja Kortemme, Christopher A Voigt

Abstract read
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Review
  3. Gene circuit-based sensors.Fundamental research · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tae Seok MoonDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.
Elizabeth J Clarke
Eli S Groban
Alvin Tamsir
Ryan M Clark
Matthew Eames
Tanja Kortemme
Christopher A Voigt
University of California, San Francisco · US

Funding

Cellular Control:Synthetic Signaling/Motility (RMI)PN2EY016546 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2005 to 2014
$16.0M
System Dynamics of the Salmonella Virulence Regulatory NetworkR01AI067699 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VOIGT, CHRISTOPHER A · 2007 to 2011
$1.5M
System Dynamics of the Salmonella Virulence Regulatory NetworkR56AI067699 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VOIGT, CHRISTOPHER A · 2012 to 2012
$279k
Engineering Synthetic Cell Motility Systems (RMI)PN1EY016546 · NEI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI LIM, WENDELL A · 2004 to 2004
$76k
NEI NIH HHS EY016546NEI NIH HHS PN1 EY016546NEI NIH HHS PN2 EY016546NIAID NIH HHS AI067699NIAID NIH HHS R01 AI067699NIAID NIH HHS R56 AI067699
6 · The paper itself

Abstract

Many applications require cells to switch between discrete phenotypic states. Here, we harness the FimBE inversion switch to flip a promoter, allowing expression to be toggled between two genes oriented in opposite directions. The response characteristics of the switch are characterized using two-color cytometry. This switch is used to toggle between orthogonal chemosensory pathways by controlling the expression of CheW and CheW*, which interact with the Tar (aspartate) and Tsr* (serine) chemoreceptors, respectively. CheW* and Tsr* each contain a mutation at their protein-protein interface such that they interact with each other. The complete genetic program containing an arabinose-inducible FimE controlling CheW/CheW* (and constitutively expressed tar/tsr*) is transformed into an Escherichia coli strain lacking all native chemoreceptors. This program enables bacteria to swim toward serine or aspartate in the absence or in the presence of arabinose, respectively. Thus, the program functions as a multiplexer with arabinose as the selector. This demonstrates the ability of synthetic genetic circuits to connect to a natural signaling network to switch between phenotypes.

Indexed as

ArabinoseBacterial ProteinsChemotaxisDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGenotypeIntegrasesMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsMutationPhenotypePromoter Regions, GeneticSignal TransductionArabinoseBacterial ProteinsCheW protein, E coliDNA-Binding ProteinsEscherichia coli ProteinsfimB protein, E colifimE protein, E coliIntegrasesMembrane ProteinsMethyl-Accepting Chemotaxis Proteinstsr protein, E coli

Identifiers

PMID21185306
PMCPMC3033806
OpenAlexW2007513082

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.